Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 382 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 367 / 2e-118 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 315 / 2e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 300 / 7e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 298 / 3e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 297 / 3e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 283 / 2e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 283 / 2e-86 RLK receptor lectin kinase (.1) AT4G02420 282 / 3e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 275 / 1e-83 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262866 [exp] 1087 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 1016 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 1016 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 1000 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 973 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 971 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 968 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 889 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 471 / 9e-159 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033783 [exp] 462 / 1e-154 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 456 / 3e-152 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 444 / 3e-149 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 437 / 3e-145 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 409 / 1e-138 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 434 / 1e-137 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10020456 [exp] 416 / 7e-137 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 404 / 4e-135 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 409 / 2e-134 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 409 / 3e-134 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G283200.1 pacid=42790317 polypeptide=Potri.001G283200.1.p locus=Potri.001G283200 ID=Potri.001G283200.1.v4.1 annot-version=v4.1 ATGAGTTTAATTTTCGGTCGAGCCACGTATTACAAACCGATGCAGCTTTGGGACGAGGCCTCAGGGAATCTTACAGACTTCACCACCCATTTCTCTTTTT CCATCGATTCGCAAGGTCGACGTGCATACGGAGATGGATTGGCTTTCTTTCTTGCGCCAGAAGGATCAAAGCTTCCGCCTAATCTCTCTCAAGGTCGAAG TCTAGGTCTTACAAGGAATGATCAGCAACTAAACACAACGGATAATCATTTTGTTGCTGTGGAGTTCGATATCTACAAAAATTATTTTGATCCACCAGGC GAGCATGTAGGTATTGACATCAACTCTATGCAATCTGTAAATAATATTACTTGGCTGTGTAATATTAGTGGAGGGATAAAAACTGACGCTTGGATTAGTT ATAGTTCAAGTACACATAATCTGAGTGTCGCCTTCACCGGTTATAGAAATAACACTGTAGAAATGCAATTCCTTAGTCAAATAGTTAGCTTGAGGGATTA CCTACCAGAAAGAGTTAGTTTTGGCTTTTCGGCTTCAACAGGAAGTGCATCTGCCCTACATACCCTTTACTCGTGGGATTTTAGTTCAAGATTAGAAATT GATGATAATGTTACCAATCCAATAGATCCAGATACCAATACATTAGATCCAGCTGCAGCTTCTCCGCCAAATGGTGGTTCACGTAGGAATCGGAAAAAGA ACAGGACAGGACTGGCAGTTGGATTGGGTGTTGGGGGTGGTGCTATAGTTGTTGGGGCCGCTTTGGTTGGGTTTGTTATTAAGTTTATGTGTGGGCACGA AGAAGATGAAGAAGGTGGTCATGTCGTTGAAGAGTACATGGATGAAGAATTTGAAAGGGGAACAGGACCAAAGAAGTTCTCTTACCAAGAATTGGCTCGA GCTACAAGTAACTTCAAGGATGAAGAGAAGCTAGGTGAGGGTGGGTTCGGTGGTGTCTATAAAGGTTTTTTGAAGGAGATTGATTCATTCGTTGCGGTGA AGAGAGTATCAAGAGGTTCTAAACAAGGGATTAAAGAATATGCAGCAGAGGTAAAGATCATTAGCCGATTGAGGCACAGAAACTTAGTCCAACTCATTGG TTGGTGTCATGAAAGAAAGGAGCTTTTACTTGTTTACGAATTCATGTCTCATGGCAGCTTAGACTCCCATCTTTTCAAAGAAACTAGCTTGTTGACATGG GAGGTGAGGTACAAAATCGTGCAAGGCTTGGCATCGGGGCTGTTGTACTTGCATGAAGAATGGGAACAATGTGTGGTGCATAGAGATATAAAGTCTAGCA ACATTATTTTGGACTCAGAATTCAATGCTAAGCTTGGGGATTTTGGTTTGGCTAGGCTTGTGGACCATGGAAAAGGTTCTCAAACAACAGTTTTGGCAGG GACTATGGGCTACATGGCTCCAGAGTGTGCAATGACAGGCAAGGCTAGCAGAGAGTCAGATGTTTACAGTTTTGGAATTGTTGCATTGGAGATAGCTTGT GGAAGAAAACCTATCAACCCAAAGGCCAGTAATGAAGATCGAGTGTCCATGGTGCAGTGGGTTTGGGAGCTCTATGGTGAAGGAAAGCTACTTGAAGCAG TTGACCCAAGACTATGCGGAGATTTTAACAAGACGCAGATGGAACGCTTGATGATTGTCGGCCTTTCGTGTGCTCATCCGGATGAACATCTTAGACCCTC AATTCGGCAAGCACTTCACGTACTTAATTTTGATGCTCCATTGCCTATTCTCCCATCAAAGATGCCCGTGCCATCATATTTCGCCCCGCCAATATCTGCA TCTTCACTTTCAATAATGTCCTATGGCCTTAACAGATTCTGA
AA sequence Show only first row Show all	>Potri.001G283200.1 pacid=42790317 polypeptide=Potri.001G283200.1.p locus=Potri.001G283200 ID=Potri.001G283200.1.v4.1 annot-version=v4.1 MSLIFGRATYYKPMQLWDEASGNLTDFTTHFSFSIDSQGRRAYGDGLAFFLAPEGSKLPPNLSQGRSLGLTRNDQQLNTTDNHFVAVEFDIYKNYFDPPG EHVGIDINSMQSVNNITWLCNISGGIKTDAWISYSSSTHNLSVAFTGYRNNTVEMQFLSQIVSLRDYLPERVSFGFSASTGSASALHTLYSWDFSSRLEI DDNVTNPIDPDTNTLDPAAASPPNGGSRRNRKKNRTGLAVGLGVGGGAIVVGAALVGFVIKFMCGHEEDEEGGHVVEEYMDEEFERGTGPKKFSYQELAR ATSNFKDEEKLGEGGFGGVYKGFLKEIDSFVAVKRVSRGSKQGIKEYAAEVKIISRLRHRNLVQLIGWCHERKELLLVYEFMSHGSLDSHLFKETSLLTW EVRYKIVQGLASGLLYLHEEWEQCVVHRDIKSSNIILDSEFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECAMTGKASRESDVYSFGIVALEIAC GRKPINPKASNEDRVSMVQWVWELYGEGKLLEAVDPRLCGDFNKTQMERLMIVGLSCAHPDEHLRPSIRQALHVLNFDAPLPILPSKMPVPSYFAPPISA SSLSIMSYGLNRF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G262866 [exp]	1.00	0.9218
AT2G36430			Plant protein of unknown funct...		Potri.004G185501 [exp]	1.73	0.8930
AT4G27190			NB-ARC domain-containing disea...		Potri.001G426200 [exp]	4.00	0.8882
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.007G090600 [exp]	5.83	0.8287
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	6.16	0.8509
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.019G031700 [exp]	6.70	0.8828
AT5G07900			Mitochondrial transcription te...		Potri.001G034600 [exp]	7.21	0.8382
AT3G53270			Small nuclear RNA activating c...		Potri.004G126760 [exp]	8.36	0.8746
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	8.77	0.8842
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133420 [exp]	9.16	0.8337

Compare expression of checked genes

Potri.001G283200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.