Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 473 / 2e-159 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 368 / 1e-118 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 365 / 3e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 355 / 2e-113 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 349 / 4e-111 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 343 / 4e-109 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 335 / 5e-106 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 332 / 1e-104 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 323 / 1e-101 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 320 / 2e-100 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283400 [exp] 1160 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 1061 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 1061 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 1042 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 1036 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 1033 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 1032 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 978 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 626 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020452 [exp] 620 / 0 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 612 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 610 / 0 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 550 / 0 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 504 / 3e-171 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 503 / 4e-171 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 488 / 4e-164 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 483 / 2e-162 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 474 / 5e-162 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 468 / 9e-158 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G283204.1 pacid=42788958 polypeptide=Potri.001G283204.1.p locus=Potri.001G283204 ID=Potri.001G283204.1.v4.1 annot-version=v4.1 ATGAATTCAAGTTCCGGTCGAGCCACGTATTACAAACCGATGCAGCTTTGGGACGAGGCCTCGGGGAATCTTACAGACTTCACTACCCATTTCTCTTTTT CCATCGATTCGCAAGGTCAAACTGCATACGGAGATGGATTGGCTTTCTTTCTTGGGCCTGAAGAGCTTCCGCCTCTTCGCTTCCAGGGTGGAAGTCTAGG TCTTTTAAGGAACAATCAGGCACTAAACACAACGGATAATCACTTTGTCGCTGTGGAGTTCGATATCTTCCAAAATTATTTTGATCCACCAGGCGAGCAT GTAGGTATTGACATCAACTCTCTGAAATCTGAAAATAATATTACTTGGCTGTGTGATATTAGGAGAGGGAGAAGAACTGACGCTTGGATTAGTTATACTT CAAGTACACATAATCTGAGTGTCGCCTTCACTGGTTATAGAAATAACACTGAAGAAATGCAATTCCTTAGTCAAATAGTTAGTTTGAGGGATTACCTACC AGAAAGAGTTAGTTTTGGCTTTTCGGCTTCAACAGGAGATTTATTTGCCATACATACCCTTTACTCGTGGGATTTTAGTTCAAGCTTAGAAATTGATGAT AATGTTACCAGTCCAATAGATCCAGCTGCAGCTTCTCCGCCAAATGGTGGTTCTCTTAGGAATCGGAAGAAGAACAGGACAGGACTGGCAGTTGGATTGG GTGTTGGAGGTGGTGCTATAGTTGTTGGGGCCGCTTTGGTTGGGATTGTTATTAAGTTTATGCGTGGGCACGAAGAAGATGAAGGAGATGGTCATATCCT TGAAGAGTACATGGATGATGAATTTGAAAGGGGAACAGGACCAAAGAAGTTCTCTTACCAAGAATTGGCTCGAGCTACAAGTAACTTCAAGGATGAAGAG AAGCTAGGTGAGGGTGGGTTCGGTGGTGTCTATAAAGGTTTTTTGAAGGAGATTGATTCATTCGTTGCGGTGAAGAGAGTATCAAGAGGTTCTAAACAAG GGATTAAAGAATATTCAGCAGAGGTAAAGATCATTAGCCGATTGAGGCACAGAAACTTAGTCCAACTCATTGGTTGGTGTCATGAAAGAAGGGAGCTTTT ACTTGTTTACGAATTCATGCCTCATGGCAGCTTAGACTCCCATCTTTTCAAACAAACTAGCTTGTTGACATGGGAGGTGAGGTACAAAATCGTGCAAGGC TTAGCATCGGGGCTGTTGTACTTGCATGAAGAATGGGAACAATGTGTGGTGCATAGAGATATAAAGTCTAGCAACATTATGTTGGACTCAGAATTCAATG CTAAGCTTGGGGATTTTGGTTTGGCTAGGCTTGTAGACCATGGAAAAGGTTCACAAACAACAGTTTTGGCAGGGACTATGGGCTACATGGCTCCAGAGTG TGCAATGACAGGCAAGGCTAGCAGAGAGTCAGATGTTTACAGTTTTGGAATTGTTGCATTGGAGATAGCTTGTGGAAGAAAACCTATCAACCCAAAGGCC AGTAATGAAGATCTAGTGTCCATGGTGCAGTGGGTTTGGGAGCTCTATGGTGAAGGGAAGCTACTTGAAGCAGTTGACCCAAGACTATGCGGAGATTTTA ATAAGACGCAGATGGAACGCTTGATGATCGTCGGGCTTTCGTGTGCTCATCCGGATGAACATCTTAGACCCTCAATTCGGCAATCACTTCACATACTTAA TTTTGATGCTCCATTGCCTATTCTCCCATCAAAGATGCCCGTGCCGTCATATTTCGCCCCGCCAATACCTGCATCTTCACTTTCAATAATGTCCTATGGC CTTGCAGATTCTGAAGGAGGGATGAACAAATCTTCAAGTTACAGTTACAACACTAATTCTTCCCAGTTCACCACATCTTCTTCAGCATCTTCTGCATCTG CCATGCTTCCACACGAAGGCTAA
AA sequence Show only first row Show all	>Potri.001G283204.1 pacid=42788958 polypeptide=Potri.001G283204.1.p locus=Potri.001G283204 ID=Potri.001G283204.1.v4.1 annot-version=v4.1 MNSSSGRATYYKPMQLWDEASGNLTDFTTHFSFSIDSQGQTAYGDGLAFFLGPEELPPLRFQGGSLGLLRNNQALNTTDNHFVAVEFDIFQNYFDPPGEH VGIDINSLKSENNITWLCDIRRGRRTDAWISYTSSTHNLSVAFTGYRNNTEEMQFLSQIVSLRDYLPERVSFGFSASTGDLFAIHTLYSWDFSSSLEIDD NVTSPIDPAAASPPNGGSLRNRKKNRTGLAVGLGVGGGAIVVGAALVGIVIKFMRGHEEDEGDGHILEEYMDDEFERGTGPKKFSYQELARATSNFKDEE KLGEGGFGGVYKGFLKEIDSFVAVKRVSRGSKQGIKEYSAEVKIISRLRHRNLVQLIGWCHERRELLLVYEFMPHGSLDSHLFKQTSLLTWEVRYKIVQG LASGLLYLHEEWEQCVVHRDIKSSNIMLDSEFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECAMTGKASRESDVYSFGIVALEIACGRKPINPKA SNEDLVSMVQWVWELYGEGKLLEAVDPRLCGDFNKTQMERLMIVGLSCAHPDEHLRPSIRQSLHILNFDAPLPILPSKMPVPSYFAPPIPASSLSIMSYG LADSEGGMNKSSSYSYNTNSSQFTTSSSASSASAMLPHEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283204 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283400 [exp]	1.00	0.9952	LEC.4
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283212 [exp]	3.16	0.9504
					Potri.010G219300 [exp]	4.24	0.9412
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	4.69	0.9198
AT4G37420			Domain of unknown function (DU...		Potri.005G252100 [exp]	12.84	0.9238
AT2G40095			Alpha/beta hydrolase related p...		Potri.008G067700 [exp]	13.19	0.9017
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	14.07	0.9353
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.002G041600 [exp]	14.96	0.9384
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.004G057900 [exp]	15.71	0.9276
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037300 [exp]	16.00	0.9230

Compare expression of checked genes

Potri.001G283204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.