Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 384 / 5e-124 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 369 / 5e-118 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 303 / 9e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 303 / 1e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 300 / 2e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 289 / 1e-87 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 288 / 5e-87 RLK receptor lectin kinase (.1) AT4G02410 284 / 8e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 281 / 1e-84 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 278 / 1e-83 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262866 [exp] 1109 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 1106 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 1106 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 1067 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 1066 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 991 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 965 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 886 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 512 / 1e-173 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033783 [exp] 480 / 4e-160 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 473 / 2e-157 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 437 / 7e-144 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 415 / 2e-139 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 405 / 6e-134 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 412 / 7e-134 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 410 / 3e-133 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 403 / 1e-130 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 397 / 4e-126 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 387 / 3e-125 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G283212.1 pacid=42790912 polypeptide=Potri.001G283212.1.p locus=Potri.001G283212 ID=Potri.001G283212.1.v4.1 annot-version=v4.1 ATGGGAAAGCCTCCTGTTCCATTTCTTCCTTTTGTTTTCTCAACTTTCTTCACACTAATAATCCCTTCTGCGAGTGGATTATCTTTCAACTTCACCAGCT TCATTGTTGGCAATCAAAGCATTTCATATGAGCAGGACGCATATCCTGCAGATAGAGCTATTCAGCTCACCAAAAATCTAAGAAATGCTAATATGCATTT CAGTTTCGGTCGAGCCACGTATTACAAACCGATGCAGCTTTGGGACGAGGCCTCGGGGAATCTTACAGACTTCACTACCCATTTCTCTTTTTCCATCGAT TCGCAAGGTCGAACTGAATACGGAGATGGATTGGCTTTCTTTCTTGCGCCAGAAGGATCAAAGCTTCCGCCTAATCTCTCTCAGGGTGAAAGTCTAGGTC TTACAAGGGATGATCAGGAACGAAACACAACGGATAATCATTTTGTTGCTGTGGAGTTCGATATCTTCGAAAATATTGGTCTTGATCCACCAGGCGAGCA TGTAGGTATCGACATCAACTCTATGCAATCTGTAAATAATATTACTTGGCTGTGTGATATTAGTGGAGGGAGAATAACTGAAGCTTGGATTAGTTATAAT TCAAGTACACATAATCTGAGTGTCGTCTTCACTGGTTATAGAAATAACTCTGTAGAAAGGCAATTCCTTAGTCAAATAGTTAGTTTGAGGGATTACCTAC CAGAAAGAGTTAGTTTTGGCTTTTCGGCTTCAACAGGAAGTGCATCTGCCCTACATACCCTTTACTCGTGGGATTTTAATTCAAGTTTAGAAATTGTTGA TAATGTTAGCAAACCAATAGATCCCGCTACCAATCCACTAAATCCAGCTACCAATCCAATAGATCCAGCTGCAGCCTCTCCGCCAAATGGTGGTTCACGT AGGAATCGGAAAAAGAACAGGACAGGACTGGCAGTTGGATTGGGTGTTGGGGGTGGTGCTATAGTTGTTGGGGCCGCTTTGGTTGGGTTTGTTATTAAGT TTATGTGTGGGCACGAAGAAGATGAAGAAGGTGGTCATGTCCTTGAAGAGTACATGGATGATGAATTTGAAAGGGGAACAGGACCAAAGAAGTTCCCTTA CCAAGAATTGGCTCGAGCTACAAATAACTTCAAGGATGAAGAGAAGCTAGGTGAGGGTGGGTTCGGTGGTGTCTATAAAGGTTTTTTGAAGGAGATTGAT TCATTCGTTGCGGTGAAGAGAGTATCAAGAGGTTCTAAACAAGGGATTAAAGAATATGCAGCAGAGGTAAAGATCATCAGCCGATTGAGGCACAGAAACT TAGTCCAACTCATTGGTTGGTGTCATGAAAGAAGGGAGCTTTTACTTGTTTACGAATTCATGCCTCATGGCAGCTTAGACTCCCATCTTTTCGAAGAAAC TAGCTTGTTGACATGGGAGGTGAGGTACAAAATTGTGCAAGGCTTGGCATCGGGGCTGTTGTACTTGCATGAAGAATGGGAACAATGTGTGGTGCATAGA GATATAAAGTCTAGCAACATTATGTTGGACTCAGAATTCAATGCTAAGCTGGGGGATTTTGGTTTGGCTAGGCTTGTCGACCATGGAAAAGGTTCTCAAA CAACAGTTTTGGCAGGGACTATGGGCTACATGGCTCCAGAGTGTACAATGACAGGCAAGGCTAGCAGAGAGTCAGATGTTTACAGTTTTGGAATTGTTGC ATTGGAGATAGCTTGTGGAAGAAAACCTATCAACCCAAAGGCCAGTAATGAAGATCAAGTGTCCATGGTGCAGTGGGTTTGGGAACTCTATGGTGAAGGG AAGCTACTTGAAGCAGTTGACCCAAGACTATGCGGAGATTTTAATAAGACGCAGATGGAACGCTTGATGATCGTCGGGCTTTCGTGTGCTCATCCGGATG AACATCTTAGACCCTCAATTCGGCAATCACTTCACATACTAAATTTTGATGCTCCATTGCCTATTCTCCCATCAAAGATGCCCATGCCGTCATATTTCGC CCCGCCAATATCTGCATCTTCACTTTCAATAATGTCCTATGGCCTTGCAGATTCTGAAGGAGGGATGAACAAATCTTCAAGTCATAGTTACAACACTAAT TCTTCCCAGTTCACCACATCTTCTTCAGCATCTTCTGCATCTGCCATGCTTCCACACGAAGGCTAA
AA sequence Show only first row Show all	>Potri.001G283212.1 pacid=42790912 polypeptide=Potri.001G283212.1.p locus=Potri.001G283212 ID=Potri.001G283212.1.v4.1 annot-version=v4.1 MGKPPVPFLPFVFSTFFTLIIPSASGLSFNFTSFIVGNQSISYEQDAYPADRAIQLTKNLRNANMHFSFGRATYYKPMQLWDEASGNLTDFTTHFSFSID SQGRTEYGDGLAFFLAPEGSKLPPNLSQGESLGLTRDDQERNTTDNHFVAVEFDIFENIGLDPPGEHVGIDINSMQSVNNITWLCDISGGRITEAWISYN SSTHNLSVVFTGYRNNSVERQFLSQIVSLRDYLPERVSFGFSASTGSASALHTLYSWDFNSSLEIVDNVSKPIDPATNPLNPATNPIDPAAASPPNGGSR RNRKKNRTGLAVGLGVGGGAIVVGAALVGFVIKFMCGHEEDEEGGHVLEEYMDDEFERGTGPKKFPYQELARATNNFKDEEKLGEGGFGGVYKGFLKEID SFVAVKRVSRGSKQGIKEYAAEVKIISRLRHRNLVQLIGWCHERRELLLVYEFMPHGSLDSHLFEETSLLTWEVRYKIVQGLASGLLYLHEEWEQCVVHR DIKSSNIMLDSEFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECTMTGKASRESDVYSFGIVALEIACGRKPINPKASNEDQVSMVQWVWELYGEG KLLEAVDPRLCGDFNKTQMERLMIVGLSCAHPDEHLRPSIRQSLHILNFDAPLPILPSKMPMPSYFAPPISASSLSIMSYGLADSEGGMNKSSSHSYNTN SSQFTTSSSASSASAMLPHEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283212 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283400 [exp]	1.41	0.9562	LEC.4
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283700 [exp]	2.00	0.9517
					Potri.010G219300 [exp]	2.44	0.9518
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	2.44	0.9498
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283204 [exp]	3.16	0.9504
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.003G132700 [exp]	5.09	0.9537
AT4G10780			LRR and NB-ARC domains-contain...		Potri.001G405025 [exp]	6.92	0.9404
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	11.53	0.9441
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.006G104100 [exp]	14.89	0.9155
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	15.29	0.9376

Compare expression of checked genes

Potri.001G283212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.