Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 496 / 8e-168 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 384 / 8e-124 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 370 / 2e-118 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 340 / 7e-107 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 306 / 2e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 306 / 2e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 303 / 4e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 303 / 7e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 291 / 2e-88 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 290 / 4e-88 RLK receptor lectin kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 1102 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 1102 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 1098 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 1088 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 1083 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 992 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 987 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 910 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 659 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020446 [exp] 644 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 508 / 3e-172 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 484 / 7e-162 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 479 / 8e-161 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 465 / 2e-157 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 442 / 4e-146 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 411 / 2e-138 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 417 / 6e-136 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 407 / 2e-132 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 400 / 1e-127 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF03388 [poplar] [flax] Lectin_leg-like Legume-like lectin family
Representative CDS sequence Show only first row Show all	>Potri.001G283700.1 pacid=42789408 polypeptide=Potri.001G283700.1.p locus=Potri.001G283700 ID=Potri.001G283700.1.v4.1 annot-version=v4.1 ATGGGAAAGCTTCCTGTTCCATTTCTTCCTTTTGTTTTCTCAACTCTCTTCACACTAATATTCCCTTCTGCGAGTGGATTATCTTTCAACTTCACCAGCT TCGTTGTTGGCGATCGAAACATTTCATACGAGCAGGATGCATCTCCTGCTCCAGATGGAGCTGTTCGGCTCACCAAAAGTCTAATAGATACTAATATGGC TTTAAGTTCCGGTCGAGCCACGTATTACAAATCGATGCAGCTTTGGGACAAGGCCTCGGGGAATCTTACAGACTTCACTACCCATTTCTCTTTTTCCATC AATTCGCAAACTAAAGCTCAATACGGAGATGGATTGGCTTTCTTTCTTGCGCCAGAAGGATCAATGCTTCGGCCTAATCTTTCTCAGGGTGCAGGTCTAG GTCTTGCAAGGAGTGATCAGCCACTAAACACAACGGCTAATCAATTTGTTGCAGTGGAGTTCGATATCTTCAAAAATGATTTTGATCCACCAGGCGAGCA TGTAGGTATTGACATCAACTCAATGCAATCTGTAAATAATATTACTTGGCTGTGTGATATTAGAGAAGGGAGAAAAACTGAAGCTTCGATTAGTTATAAT TCAAGTACACATAATCTGAGTGTCGCCTTCACTGGTAATAGAAGTAACAGTACTGTAGAAATGCAATTCCTTAGTCAAATAGTTAGTTTGAGGGATTACC TACCAGAAAGAGTTAGTTTTGGCTTTTCGGCTTCAACAGGAGATTTATTTGCCATACATACCCTTTACTCGTGGGATTTTAGTTCAAGCTTAGAAATTGA TGATAATGTTCCCAGTCCAATAGATCCAGCTGCAGCTTCTCCGCCAAATGGTGGTTCTCTTAGGAATCGGAAAAAGAACAGGACAGGACTGGCAGTTGGA TTGGGTGTTGGGGGTGGTGCTATGGTTGTTGGGGCCGCTTTGGTTGGGTTTGTTATTAAGTTTATGTGTGGGCACGAAGAAGATGAAGAAGGTGGTCATG TCCTTGAAGAGTACATGGATGATGAATTTGAAAGGGGAACAGGACCAAAGAAGTTCTCTTACCAAGAATTGGCTCGAGCTACAAGTAACTTCAAGGATGA AGAGAAGCTAGGTGAGGGTGGGTTCGGTGGTGTCTATAAAGGTTTTTTGAAGGAGATTGATTCATTCGTTGCGGTGAAGAGAGTATCAAGAGGTTCTAAA CAAGGGATTAAAGAATATGCAGCAGAGGTAAAGATCATCAGCCGATTGAGGCACAGAAACTTAGTCAAACTCATTGGTTGGTGTCATGAAAGAAAGGAGC TTTTACTTGTTTACGAATTCATGCCTCATGGCAGCTTAGACTCCCATCTCTTCGAAGAAACTAGCTTGTTGACATGGGAGGTGAGGTACAAAATTGTGCA AGGCTTGGCATCGGGGCTGTTGTACTTGCATGAAGAATGGGAACAATGTGTGGTGCATAGAGATATAAAGTCTAGCAACATTATGTTGGACTCAGAATTC AATGCTAAGCTTGGGGATTTTGGTTTGGCTAGGCTTGTGGACCATGGAAAAGGTTCTCAAACAACAGTTTTGGCAGGGACTATGGGCTACATGGCTCCAG AGTGTACAATGACAGGCAAGGCTAGCAGAGAGTCAGATGTTTACAGTTTTGGGATTGTTGCATTGGAGATAGCTTGTGGAAGAAAACCTATCAACCCAAA GGCCAGTAATGAAGATCGAGTGTCCATGGTGCAGTGGGTTTGGGAGCTCTATGGTGAAGGAAAGCTACTTGAAGCAGTTGACCCAAGACTATGCGGAGAT TTTAATAAGACGCAGATGGAACGCTTGATGATTGTCGGCCTTTCGTGTGCTCATCCGGATGAACATCTTAGACCCTCAATTCGGCAAGCACTTCACGTAC TTAATTTTGATGCTCCATTGCCTATTCTCCCATCAAAGATGCCCGTGCCATCATATTTCGCCCCGCCAATATCTGCATCTTCACTTTCAATAATGTCCTA TGGCCTTACAGATTCTGAAGGAGGGATGAACAAATCTTCAAGTTATAGTTACAACACTAATTCTTCCCAGTTCACTACATCTTCTTCAGCTTCTTCTGCA TCTGCCATGCTTCTACACGAAGGCTAA
AA sequence Show only first row Show all	>Potri.001G283700.1 pacid=42789408 polypeptide=Potri.001G283700.1.p locus=Potri.001G283700 ID=Potri.001G283700.1.v4.1 annot-version=v4.1 MGKLPVPFLPFVFSTLFTLIFPSASGLSFNFTSFVVGDRNISYEQDASPAPDGAVRLTKSLIDTNMALSSGRATYYKSMQLWDKASGNLTDFTTHFSFSI NSQTKAQYGDGLAFFLAPEGSMLRPNLSQGAGLGLARSDQPLNTTANQFVAVEFDIFKNDFDPPGEHVGIDINSMQSVNNITWLCDIREGRKTEASISYN SSTHNLSVAFTGNRSNSTVEMQFLSQIVSLRDYLPERVSFGFSASTGDLFAIHTLYSWDFSSSLEIDDNVPSPIDPAAASPPNGGSLRNRKKNRTGLAVG LGVGGGAMVVGAALVGFVIKFMCGHEEDEEGGHVLEEYMDDEFERGTGPKKFSYQELARATSNFKDEEKLGEGGFGGVYKGFLKEIDSFVAVKRVSRGSK QGIKEYAAEVKIISRLRHRNLVKLIGWCHERKELLLVYEFMPHGSLDSHLFEETSLLTWEVRYKIVQGLASGLLYLHEEWEQCVVHRDIKSSNIMLDSEF NAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECTMTGKASRESDVYSFGIVALEIACGRKPINPKASNEDRVSMVQWVWELYGEGKLLEAVDPRLCGD FNKTQMERLMIVGLSCAHPDEHLRPSIRQALHVLNFDAPLPILPSKMPVPSYFAPPISASSLSIMSYGLTDSEGGMNKSSSYSYNTNSSQFTTSSSASSA SAMLLHEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283700 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283212 [exp]	2.00	0.9517
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283866 [exp]	2.82	0.9429
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283208 [exp]	3.46	0.9420
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	6.00	0.9257
					Potri.012G125400 [exp]	6.48	0.9341
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	7.48	0.9399
AT4G20860			FAD-binding Berberine family p...		Potri.019G063400 [exp]	8.24	0.8903
					Potri.012G124832 [exp]	8.48	0.9269
AT5G53742			Protein of unknown function (D...		Potri.009G153700 [exp]	13.41	0.8922
					Potri.010G219300 [exp]	13.85	0.9249

Compare expression of checked genes

Potri.001G283700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.