Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 441 / 1e-147 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 405 / 8e-134 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 336 / 6e-107 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 332 / 4e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 324 / 2e-102 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 307 / 6e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 296 / 7e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 295 / 3e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 293 / 1e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 286 / 2e-87 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283400 [exp] 927 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 927 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 918 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 914 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 914 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 906 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 905 / 0 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 903 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 576 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020446 [exp] 559 / 0 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 553 / 0 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 550 / 0 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 510 / 5e-174 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 472 / 1e-159 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 468 / 7e-158 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 460 / 4e-157 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 464 / 7e-156 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 461 / 1e-154 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 440 / 1e-147 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G284200.2 pacid=42792549 polypeptide=Potri.001G284200.2.p locus=Potri.001G284200 ID=Potri.001G284200.2.v4.1 annot-version=v4.1 ATGAATTTAAGTTCCGGTCGAGCCACGTATTCCAAACCGATGCAGCTTTGGGACGAGGCCTCGGGGAATCTTACAGACTTCACTACCCATTTCTCTTTTT CCATCGATTCGCAACGTCGAACTGCATACGGAGATGGACTGGCTTTCTTTCTTGGGCCTGAAGAGCTTCCGCCTCTTCTCTCCAAGGGTGGAAGTCTGGG TCTTTTAAGGAACAATCAGCCACTAAACACAACGGATAATCAATTTGTTGCAGTGGAGTTCGATATCTTCCAAAATGTTTTTGATCCACCAGGCGAGCAT GTAGGTATTGACATCAACTCTATGCAATCTGCGTATTGGAGTTGCTCAACCATAACTTTAACATTACATATTGGAGTTGGTTCACTAGGCTGCGATGGAG GGAGAAGAAATAACGCTTCGATTAGTTATAATTCAAGTACTCATAATCTGAGTGTCGCCTTCACTGGTTATAGAAATAACACTGTAGAAATGCAATTCCT TAGTCAAATAGTTAGTTTGAGGGATTACCTACCAGAAAGAGTTCGTTTTGGCTTTTCTGCTTCAACAGGAGATTTATTTGCCATACATACCCTTTACTCG TGGGATTTTAGTTCAAGCTTAGAAATTGATGATAATGTTACCAATCCAATAGATCCAGCTGCAGCTTCTCCGCCAAATGGTGGTTCACGTAGGAATCGGA AAAAGAACAGGACAGGACTGGCAGTTGGATTGGGTGTTGGGGGTGGTGCTATATATAAAGATGAAGAAGGTGGTCATGTCCTTGAAGAGTACATGGATGA TGAATTTGAAAGGGGAACAGGACCAAAGAAGTTCCCTTACCAAGAATTGGCTCGAGCTACAAATAACTTCAAGGATGAAGAGAAGCTAGGTGAGGGTGGG TTCGGTGGTGTCTATAAAGGTTTTTTGAAGGAGATTGATTCATTCGTTGCGGTGAAGAGAGTATCAAGAGGTTCTAAACAAGGGATTAAAGAATATGCAG CAGAGGTAAAGATCATCAGCCGATTGAGGCACAGAAACTTAGTCCAACTCATTGGTTGGTGTCATGAAAGAAGGGAGCTTTTACTTGTTTACGAATTCAT GCCTCATGGCAGCTTAGACTCCCATCTTTTCGAAGAAACTAGCTTGTTGACATGGGAGGTGAGGTACAAAATTGTGCAAGGCTTGGCATCGGGGCTGTTG TACTTGCATGAAGAATGGGAACAATGTGTGGTGCATAGAGATATAAAGTCTAGCAACATTATGTTGGACTCAGAATTCAATGCTAAGCTGGGGGATTTTG GTTTGGCTAGGCTTGTAGACCATGGAAAAGGTTCTCAAACAACAGTTTTAGCAGGGACTATGGGCTACAAGGCTCCAGAGTGTACAATGACAGGCAAGGC CAGCAGAGAGTCAGATGTTTACAGTTTTGGAATTGTTGCATTGGAAATAGCTTGTGGAAGAACACCTATCAACCCAAAGGCCAGTAATGAAGATCAAGTG TCCATGGTGCAGTGGGTTTGGGAGCTCTATGGTGAAGGGAAGCTACTTGAAGCAGTTGACCCAAGACTATGCGGAGATTTTAATAAGACGCAGATGGAAC GCTTGATGATAGACGGGCTTTCTGCTCATCCGGATGAACATCTTAGACCCTCAATTCGGCAATCACTTCACATACTTAATTTTGATGCTCCATTGCCTAT TCTCCCATCAAAGATGCCCGTGCCGTCATATTTCGCCCCGCCAATATCTGATCTTCACTTGCAATAA
AA sequence Show only first row Show all	>Potri.001G284200.2 pacid=42792549 polypeptide=Potri.001G284200.2.p locus=Potri.001G284200 ID=Potri.001G284200.2.v4.1 annot-version=v4.1 MNLSSGRATYSKPMQLWDEASGNLTDFTTHFSFSIDSQRRTAYGDGLAFFLGPEELPPLLSKGGSLGLLRNNQPLNTTDNQFVAVEFDIFQNVFDPPGEH VGIDINSMQSAYWSCSTITLTLHIGVGSLGCDGGRRNNASISYNSSTHNLSVAFTGYRNNTVEMQFLSQIVSLRDYLPERVRFGFSASTGDLFAIHTLYS WDFSSSLEIDDNVTNPIDPAAASPPNGGSRRNRKKNRTGLAVGLGVGGGAIYKDEEGGHVLEEYMDDEFERGTGPKKFPYQELARATNNFKDEEKLGEGG FGGVYKGFLKEIDSFVAVKRVSRGSKQGIKEYAAEVKIISRLRHRNLVQLIGWCHERRELLLVYEFMPHGSLDSHLFEETSLLTWEVRYKIVQGLASGLL YLHEEWEQCVVHRDIKSSNIMLDSEFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYKAPECTMTGKASRESDVYSFGIVALEIACGRTPINPKASNEDQV SMVQWVWELYGEGKLLEAVDPRLCGDFNKTQMERLMIDGLSAHPDEHLRPSIRQSLHILNFDAPLPILPSKMPVPSYFAPPISDLHLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283212 [exp]	2.44	0.9498
AT2G37240			Thioredoxin superfamily protei...		Potri.008G113000 [exp]	5.47	0.9388
AT4G10780			LRR and NB-ARC domains-contain...		Potri.001G405025 [exp]	6.00	0.9292
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283700 [exp]	6.00	0.9257
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	7.54	0.8973
AT5G01950			Leucine-rich repeat protein ki...		Potri.006G111100 [exp]	8.83	0.9138
AT1G34300			lectin protein kinase family p...		Potri.016G102600 [exp]	13.78	0.9220
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Potri.017G019900 [exp]	16.91	0.8957
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011169 [exp]	22.89	0.8604
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.018G022900 [exp]	23.23	0.8815

Compare expression of checked genes

Potri.001G284200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.