Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09590 108 / 3e-26 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT5G09600 97 / 3e-24 SDH3-1 succinate dehydrogenase 3-1 (.1.2.3) AT4G32210 97 / 3e-24 SDH3-2 succinate dehydrogenase 3-2 (.1) AT4G37910 72 / 4e-14 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT4G24280 58 / 3e-09 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 57 / 4e-09 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G28540 52 / 3e-07 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 51 / 5e-07 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09440 48 / 6e-06 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 48 / 6e-06 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G078000 [exp] 350 / 3e-122 AT5G09590 114 / 2e-28 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.009G079700 [exp] 138 / 1e-36 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 87 / 4e-19 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.003G006300 [exp] 59 / 9e-10 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 57 / 7e-09 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.013G018000 [exp] 52 / 3e-07 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 51 / 4e-07 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 49 / 2e-06 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042600 [exp] 49 / 2e-06 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009677 [exp] 95 / 1e-21 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009039 [exp] 95 / 1e-21 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 94 / 3e-21 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10042000 [exp] 85 / 2e-18 AT5G09590 866 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 85 / 3e-18 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10027341 [exp] 62 / 2e-10 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10010496 [exp] 59 / 1e-09 AT4G24280 1120 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10037357 [exp] 59 / 1e-09 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10039044 [exp] 59 / 2e-09 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10017566 [exp] 58 / 4e-09 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein CL0335 [poplar] [flax] FumRed-TM PF01127 [poplar] [flax] Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Representative CDS sequence Show only first row Show all	>Potri.001G285100.1 pacid=42789726 polypeptide=Potri.001G285100.1.p locus=Potri.001G285100 ID=Potri.001G285100.1.v4.1 annot-version=v4.1 ATGGCCACCGCCGCTCTCCTCCGCTCTCTACGACGTCGTGACGTGGCCTCCGCTCCTCTCTCAACCTACAGATGCGTGACTAATAATGTGAAGCCATCGT GGGCTCCTTCTAATTTCAACCAAAATTGGGCTGGTTTTTCAAGAGCTTTCAGTGCAAAACCTGCAGGTGGAGATTTTATTGGTATTGATTCAGGTACAAC AAATTCACGTGTTGCCTTTATGGAAGGAAAGAATTCCAAAGTTATTGAGAATGCTGAAGGATCTAGGGCAACCCCTTCAATTGTTGCCTTCACCCCAAAG ATAGGAGCCAGGATCTTTGGAAAGAGCCCGAGCAAGGGAGTTAACCCAGACAAGGCAGTGGCTATGGGAGGTGCAATTCAGGGTGGAATTTTAGGTGGAG ATTTCAAAGAATTGTGTCTTCTTGGTGCCACTCCCTTGTCACCTGGTATCAAGACACGGGTTTTCTCCACAGCGGCTGACAACAAGAGCCAGGTTGCGGG CATTCCACCAGTTCCAAGGGGCATGTCTCAGATTGAGATGACCTCTGACATTGATCAACATAATACCATGAATATCCTTCGTCCATTATCTCCTCATCTT CCTATTTATAGGCCCCAGGTTAATTCGACATTTTCCATTGTCAATAGAATCTCAGGGGCTTTCCTATCTACTATAGTTTTGTGTTTTTATTTTATTTGTC TGAAAACGGGTTTGATTTGCTTCAACTATTATAATTTCTACCAATTCCTCTTTTATTCATCCAAGCTGATCCTAACCTCCATCGATGTTACCGCTGCCCT CGCCCTGGCCTATCATCTTTTTTACGGGGTTCGTCATTTATTGCATTGA
AA sequence Show only first row Show all	>Potri.001G285100.1 pacid=42789726 polypeptide=Potri.001G285100.1.p locus=Potri.001G285100 ID=Potri.001G285100.1.v4.1 annot-version=v4.1 MATAALLRSLRRRDVASAPLSTYRCVTNNVKPSWAPSNFNQNWAGFSRAFSAKPAGGDFIGIDSGTTNSRVAFMEGKNSKVIENAEGSRATPSIVAFTPK IGARIFGKSPSKGVNPDKAVAMGGAIQGGILGGDFKELCLLGATPLSPGIKTRVFSTAADNKSQVAGIPPVPRGMSQIEMTSDIDQHNTMNILRPLSPHL PIYRPQVNSTFSIVNRISGAFLSTIVLCFYFICLKTGLICFNYYNFYQFLFYSSKLILTSIDVTAALALAYHLFYGVRHLLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285100 [exp]	0	1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.007G055800 [exp]	4.00	0.6778
AT2G41600			Mitochondrial glycoprotein fam...		Potri.006G046350 [exp]	6.48	0.7088
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.008G008000 [exp]	10.19	0.7112	RPL7.3
AT1G01730			unknown protein		Potri.002G158500 [exp]	12.64	0.6408
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.002G134400 [exp]	16.12	0.6614
AT2G30050			transducin family protein / WD...		Potri.015G068900 [exp]	26.40	0.6205
AT5G14240			Thioredoxin superfamily protei...		Potri.001G334100 [exp]	28.46	0.6824
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.004G063300 [exp]	29.94	0.6549	RPL18.6
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	34.29	0.6794
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.005G171500 [exp]	41.42	0.6217

Compare expression of checked genes

Potri.001G285100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.