Plant FIBer expression Database

Potri.001G285300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04305 590 / 0 Magnesium transporter CorA-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G079600
[exp]
794 / 0 AT2G04305 587 / 0.0 Magnesium transporter CorA-like family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007098
[exp]
624 / 0 AT2G04305 645 / 0.0 Magnesium transporter CorA-like family protein (.1)
Lus10020472
[exp]
619 / 0 AT2G04305 638 / 0.0 Magnesium transporter CorA-like family protein (.1)
Lus10035643
[exp]
561 / 0 AT2G04305 606 / 0.0 Magnesium transporter CorA-like family protein (.1)
Lus10010751
[exp]
343 / 6e-117 AT2G04305 393 / 3e-137 Magnesium transporter CorA-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01544 CorA CorA-like Mg2+ transporter protein
Representative CDS sequence
>Potri.001G285300.1 pacid=42789639 polypeptide=Potri.001G285300.1.p locus=Potri.001G285300 ID=Potri.001G285300.1.v4.1 annot-version=v4.1
ATGCATCCAGATAGGGAAGAGACTGTTGGGAACGGGGAGGCAGGGGAGATGGACGAAGACGTCAAGGAGGATACACCTCTCGGGGGTGTCCCTCTCTACC
GCCCCCGTTTTTCAGGTATGGTGAGACAGAAAGCCTATATATTTGATGGTAAGGGAGAGTATTACAACAAAGATTGGGATTTTTCAGAACCTAAAGAAAA
TGAGTTCTGTTGGTACCATGTAGAGCTTCCAAAGATTAATCAGAAGCTTCCGCTCTTTGCACAAAGCCTCATTGACATTCTTTGCCCTCCTTTGAAACTC
CAAGATATTCTGTCACTAGTTAGCAATGGACCCTTCTGTAGTCATGTTGATGGAGCACTTGTGTTCAGAGTTAATTCTCCTGGTCCTCCAACTAGCAATT
ATACATTTAGATTAGCCGCTAGAGTTACTGAGAATTCGGTGATTACCGTGTCACTAGGACGGGTTCCGAGATTGGGTTTCTCGCCAACAAGTGAATCCCT
TCTCTCTCAGATCCCTAGTGTGGAGACTCTTTCAAGTGGTGGGACTCCCTCACATCGTGGAGGGGATCAAAATGAAGGAAGCGGGATTGTGATTAGAGAG
CATGTTCTTGAGTTTTTATTAACAATGAACCACTCAGAGGAGGCTGATAATCCCGTGCCGGAATCTGTCTCAAATCTTGTTGTTCACATTATCGACACCC
ATCTTGACCACCTTCAAGATATTACCACCAAATTTGAGATGGAACTAGACTGTGTGGAGCTCGAATTAGACAAAGGAGGTTTTGCACTGAAGAAACAGAT
GCTTGATGATAGAAGATTTCCCAAAATGCATCTTAATCTTCAACGTATATTGCAGGTGATTGCTCATGGGGAGCAAGTATTTCCACGAGTTAAAGAAAAA
TGTTCTTCAAAAAAATGGTTTTCCAGTGAAGACATAAACTCCCTAGAAGAGTTAATTGGAAGGCTAAGGAGGCTAAAAGAGAATGTGGGGTTTATATCAA
ATCGTGTCACGGCAATTCAGGCAGGTCTGGATAGCTGGCAGGCTGAGCAAATAAACAAGAAATTGTACTATCTCTCGTTCCTTTCAATAATATTCCTCCC
ATTGTCAATCATTACTGGAGTCTTTGGCATGAATGTGGGAGGAGTTCCATGGACAGAGCAGAAGAACCCAGAGGTGAAAGCTGGTTTCCGCAATGTGATG
TTTGTCTGTGTGGGAGTGCTAGTTCTCGTGCTTCTGTGCTTCCTTTTCCCAGCTCTTTACAGCCGTATAGCTGCCTGGCGACGAATGATTGCTTTGAAAA
GAAGCTGGTCTCTCAACAGGAGATCTTTTCTCAAGAGAACTCTTCCAGTTAAAGAGAGAGGCAGTTATGTTCGCCTTTGA
AA sequence
>Potri.001G285300.1 pacid=42789639 polypeptide=Potri.001G285300.1.p locus=Potri.001G285300 ID=Potri.001G285300.1.v4.1 annot-version=v4.1
MHPDREETVGNGEAGEMDEDVKEDTPLGGVPLYRPRFSGMVRQKAYIFDGKGEYYNKDWDFSEPKENEFCWYHVELPKINQKLPLFAQSLIDILCPPLKL
QDILSLVSNGPFCSHVDGALVFRVNSPGPPTSNYTFRLAARVTENSVITVSLGRVPRLGFSPTSESLLSQIPSVETLSSGGTPSHRGGDQNEGSGIVIRE
HVLEFLLTMNHSEEADNPVPESVSNLVVHIIDTHLDHLQDITTKFEMELDCVELELDKGGFALKKQMLDDRRFPKMHLNLQRILQVIAHGEQVFPRVKEK
CSSKKWFSSEDINSLEELIGRLRRLKENVGFISNRVTAIQAGLDSWQAEQINKKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTEQKNPEVKAGFRNVM
FVCVGVLVLVLLCFLFPALYSRIAAWRRMIALKRSWSLNRRSFLKRTLPVKERGSYVRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G04305 Magnesium transporter CorA-lik... Potri.001G285300
[exp]
0 1
AT5G18150 Methyltransferase-related prot... Potri.019G035000
[exp]
1.41 0.8581
AT4G33920 Protein phosphatase 2C family ... Potri.001G297200
[exp]
4.89 0.8274
AT2G39650 Protein of unknown function (D... Potri.010G203700
[exp]
6.00 0.7327
AT5G66210 CPK28 calcium-dependent protein kina... Potri.005G113600
[exp]
7.21 0.8479 CPK18
AT1G27770 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, aut... Potri.014G016600
[exp]
7.41 0.7962 Pt-ACA1.1
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Potri.019G049700
[exp]
8.00 0.7735 PtrCSLD1,CESA3.2
AT5G22380 NAC ANAC090 NAC domain containing protein ... Potri.001G218800
[exp]
10.19 0.7929
AT5G24590 NAC TIP, ANAC091 Arabidopsis NAC domain contain... Potri.012G007500
[exp]
10.24 0.7762
AT1G66400 CML23 calmodulin like 23 (.1) Potri.004G089400
[exp]
10.95 0.7376
AT5G54650 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homo... Potri.011G131700
[exp]
11.22 0.7631

Potri.001G285300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.