Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09590 935 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 877 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT4G24280 575 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 575 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G28540 509 / 1e-174 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 508 / 2e-174 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 479 / 2e-163 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 478 / 7e-163 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 474 / 2e-161 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 469 / 3e-159 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079700 [exp] 988 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.003G006300 [exp] 572 / 0 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 572 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.003G143600 [exp] 514 / 8e-177 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 514 / 8e-177 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 503 / 2e-172 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 487 / 2e-166 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042600 [exp] 482 / 2e-164 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G206600 [exp] 476 / 4e-162 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009039 [exp] 954 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 948 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 941 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 940 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10042000 [exp] 861 / 0 AT5G09590 866 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10037357 [exp] 575 / 0 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10035781 [exp] 573 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10039044 [exp] 567 / 0 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10017566 [exp] 561 / 0 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10027341 [exp] 548 / 0 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Potri.001G285500.2 pacid=42789172 polypeptide=Potri.001G285500.2.p locus=Potri.001G285500 ID=Potri.001G285500.2.v4.1 annot-version=v4.1 ATGAAAATGGTTCCATATAAGATAGTCAGGGCTCCAAATGGTGATGCATGGGTTGAAGCCAATGGGCAGCAATATTCACCTAGCCAAATTGGGGCCTTTA TTCTGACCAAGATGAAAGAAACTGCAGAAGCATATCTTGGAAAAGGAATTACAAAAGCTGTGATCACTGTGCCAGCCTATTTCAATGATGCTCAAAGACA AGCTACAAAGGATGCTGGAAGAATTGCTGGCCTTGATGTGCAGAGAATCATCAATGAACCTACAGCAGCAGCACTTTCCTATGGTATGAACAACAAAGAG GGTCTCATTGCAGTTTTCGACCTTGGTGGTGGGACTTTCGATGTTTCTATCTTAGAGATCTCAAATGGTGTTTTTGAGGTTAAAGCTACAAATGGTGACA CATTCTTGGGAGGAGAGGACTTTGACAACACCCTTTTAGAGTATTTGGTCGATGAATTTAAGAGAACTGAGGGAATTGATCTTTCAAAAGACAAGCTTGC CTTGCAGAGGCTCCGTGAAGCAGCAGAAAAGGCTAAGATAGAGCTCTCATCAACAACTCAGACTGAAATCAACTTGCCGTTCATCACGGCTGATTCGTCA GGTGCTAAACATTTGAATATCACACTGACCAGATCCAAATTTGAAAGCTTGGTGAATCACTTGATTGAAAGGACCAGGATCCCATGCAAGAACTGTTTGA AGGATGCTGGCATATCCACCAAGGAAGTTGACGAGGTTCTTCTTGTTGGAGGGATGACTCGTGTGCCCAAGGTTCAGGATATAGTAGCTGAGATCTTTGG AAAGAGCCCTAGCAAGGGAGTAAACCCAGACGAGGCAGTGGCTATGGGAGCTGCACTTCAGGGTGGGATTTTACGTGGAGATGTCAAAGAATTGCTTCTC CTTGATGTCACTCCCTTGTCACTTGGTATAGAGACACTTGGTGGCATCTTCACCAGGTTGATCAGCAGGAACACGACAATTCCTACAAAGAAGTCTCAGG CTTTCTCCACAGCTGCTGACAACCAGACTCAGGTTGGTATCAAGGTGCTACAAGGTGAGCGTGAAATGGCATCTGACAACAAGCTATTGGGAGAATTTGA TCTTGTCGGTATTCCACCAGCTCCCAGGGGCATGCCTCAGATTGAGGTGACCTTTGATATTGATGCCAATGGTATTGTTACTGTCTCTGCCAAGGACAAA ACCACTGGCAAAGAACAGCAGATCACCATCCGTTCATCAGGAGGTCTTTCAGAAGATGAGATTGAGAAGATGGTCAAGGAGGCTGAACAGTTTGCTCAGA AGGATCAGGAGAGAAAGGCCTTGATTGATATAAAAAATAGTGCAGACACCACTATCTACAGCGTAGAGAAAAGCCTTAATGAGTACAGGGAGAAGATTCC CTCTGAAATCTCGAAGGAGATTGAAGATGCTGTTGCAGATTTGAGGAAGGCAATGGGCGGAGACAGCGTTGATGATATCAAATCCAAACTAGACGCCGCA AACAAAGCAGTTTCAAAGATTGGAGAGCACATGTCCAAGGGCAGCAGTGGTGGAGGTGATGGTGCTTCTGGAGGAGGTTCACAGGGTGGTGACCAGACTC CCGAGGCTGACTTCGAGGAGGTGAAGAAGTGA
AA sequence Show only first row Show all	>Potri.001G285500.2 pacid=42789172 polypeptide=Potri.001G285500.2.p locus=Potri.001G285500 ID=Potri.001G285500.2.v4.1 annot-version=v4.1 MKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKETAEAYLGKGITKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEYLVDEFKRTEGIDLSKDKLALQRLREAAEKAKIELSSTTQTEINLPFITADSS GAKHLNITLTRSKFESLVNHLIERTRIPCKNCLKDAGISTKEVDEVLLVGGMTRVPKVQDIVAEIFGKSPSKGVNPDEAVAMGAALQGGILRGDVKELLL LDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQAFSTAADNQTQVGIKVLQGEREMASDNKLLGEFDLVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK TTGKEQQITIRSSGGLSEDEIEKMVKEAEQFAQKDQERKALIDIKNSADTTIYSVEKSLNEYREKIPSEISKEIEDAVADLRKAMGGDSVDDIKSKLDAA NKAVSKIGEHMSKGSSGGGDGASGGGSQGGDQTPEADFEEVKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285500 [exp]	0	1
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Potri.003G055800 [exp]	3.16	0.9517	Pt-HSP91.3
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.001G054400 [exp]	3.46	0.9510	CPN60.1
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Potri.002G248300 [exp]	4.12	0.9311
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	5.65	0.9578
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	7.61	0.9556
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Potri.002G255300 [exp]	8.06	0.8893
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.009G079700 [exp]	8.36	0.8863
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	8.66	0.9550
AT1G01940			Cyclophilin-like peptidyl-prol...		Potri.002G149700 [exp]	10.24	0.9290
AT2G15560			Putative endonuclease or glyco...		Potri.009G100600 [exp]	10.95	0.9355

Compare expression of checked genes

Potri.001G285500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.