Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64420 952 / 0 DNA polymerase V family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079900 [exp] 1448 / 0 AT5G64420 958 / 0.0 DNA polymerase V family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025659 [exp] 996 / 0 AT5G64420 1206 / 0.0 DNA polymerase V family (.1) Lus10041274 [exp] 981 / 0 AT5G64420 1208 / 0.0 DNA polymerase V family (.1) Lus10037435 [exp] 556 / 2e-176 AT5G64420 831 / 0.0 DNA polymerase V family (.1) Lus10018176 [exp] 417 / 4e-128 AT5G64420 351 / 3e-104 DNA polymerase V family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04931 [poplar] [flax] DNA_pol_phi DNA polymerase phi
Representative CDS sequence Show only first row Show all	>Potri.001G285600.2 pacid=42788804 polypeptide=Potri.001G285600.2.p locus=Potri.001G285600 ID=Potri.001G285600.2.v4.1 annot-version=v4.1 ATGGGAAGCAAGAAAAGAAGCTCCAATTCAGCAGAGGAAGTTGAGGATTCAGATAATACAAATACAAAAACTGAGAATGCAAACTTGGAGGATATGAATA AAGAGAATGCAAGTTCAAATCTAAGTAGAAAGAAAATGAAGAAAGATAAGAATAAAGAGAATGAAACCCTGGACGGAGATGCTTCTAAAGCAGGCCTTTA TAATAATAATTCTAGTTCGCTGAAACCCATGGAAAGACGAAAGAAGAGGAAAGCATTGGATAAAGAGCGCCAGCATGCTACTTCAGAGGATAAGGATGGG AAGACTAAAAAAATGGATGTTGATTCAAAGGTTACCGAAAATAAAGAGCAGATGGGAGCTTCCTCTAGTGGGGTGTTGCCGGAGTTTCACATTGGCGTCT TTACAGAACTGATATCGGCTGATGTGTCTGTGAGAGAAGCTGCAGTGGAGAGATTGGTCATGGAGTTGCAAAAGGTTCAGAAGGCGTATGAAAATGCAGA GAATAAGGTGGTGGTAGAAGATGGGTTGAAACTGGAAGCGAAGAAGGATGATGGGTTGAATGACTGTGCTCCTTCTGTGAGATATGCTGTGCGTAGGCTT ATTCGCGGTGCTTCTTCATCAAGGGAGTGCGCAAGGCAAGGATTTGCATTGGGCTTGGCGGTGTTAATTGGTACAATTCCTAGCATCAAAGTGGATTCAG TGATGAATCTAATAGTTGACATGTTAGAAGTTTCTTCATCAATGAAGGGTCAGGACATAAGGGATTGCCTTTTAGGTCGGCTATTTGCTTATGGTGCTCT TGCCCGATCAGGAAGACTGGTGGAAGTGTGGATTTCTGATCATAACACCCTCTTCATTAAGGAATTCACCAATGTACTTATCTCCCTTGCATCAAAAAAA CGATATTTGCAAGAGCCTGCTGTTGCAATTATTTTAGAATTGGTCGAAAAGTTGCCAACTGAGGCTGTGTTGAATCACGTACTTGAAGCTCCAAGACTGT GTGAGTGGTTTGAAGGTGATGCCGATGCTGGAAATCCTGATGCTTTGCTTTTAGCTTTGAGAATTCAGGAGAAAGTTTCTGTTGATAGTGAAATGTTCGG AAAGATTTTGCCACATCCGTTCAGCCCTAGTAGGCTTTTTGCATCTGATCATTTGTCCTCTATTATTAACTGCCTGAAGGAATCAACGTTCTGTCAGCCT AGAATTCACGGTGTGTGGCCTGTTCTGGTAAATATTCTTTTACCTGATGTCGTTATGCAAGCTGAAGATGTGGTATCAGCTTCTAATTCTCTAAAAAAGC ATAAAAAAAGTCGCAAGTCTAGCTCTTCTGAAGAAGAAGTTGTCAAGATTGTTCAGTGTTTCCGTGAAGTTGTTATTGAAGGGTCCCTTCTTCTCTCTTC TCATGATCGCAAGCACTTGGCATTTCATATTCTGCTTCTTCTCCTCCCAAGGCTCCCCGCATCATTCATTCCACATGTTCTTTCTCACAAAATTGTGCAA TGCTTGATGGATATACTTTCAACAAAGGACTCTTGGCTGTATAAAGTCGCGCAGCATTTTCTTAAGGAATTATCTGATTGGGTAGGAAATGATGATGTCA GAAGGGTTGCTGTTATAGTGGCTTTACAAAGACACAGCAATGCAAGATTTGATGGCATCACCAGAACAAAAACAGTTAGAGCTTTGGTGACAGAGTTTAA AACAGAATCTGGTTGCATGCTGTTTATTCAGAATTTAATGAACATGTTTGTGGATGAAGGTTGTTCTTCAGAGGAACCCTCAGATCCGAGTCAAACTGAT GACAATTCAGAGATGGGTTCTGTCGAGGATAAGGATTCAAATGGTGCAATGGAAAACTCTGATTTCTTGAAGAGTTGGGTGGTGGAATCCCTCCCGAGTA TTTTGAAACATTTGAAGCTGGAGCCTGAAGCAAAGTTTCGGGTGCAGAGGGAAATTTTGAAGTTTCTAGCTGTTCAGGGTCTGTTCTCTGCATCTCTTGG CTCTGAAGTTACATCTTTTGAATTGAAGGAGAAATTTAAATGGCCAAAGGCAGCCACTTCAAGTGCAATTTGCAGAATGTGCATCGAGCAGATCCAATCA CTGCTGGCAAATGCTCAAAAGATAGAGGGGTTACATTCTTTGGCAAGTGGCCTGGAGCACAGTGATCTTGGATCTTACTTCATGCGTTTTCTCAGTACAC TCGGAAACATTCCTTCGGTTTCTCTTTTCCGATCTTTGAGTGATGAAGATGAAAAGGCATTTGAAAAATTGCAAGAAATGGAAACTAGGCTGTCTAGAGA GGAAAAAAATTTTGTGATTGGTGCTGAAGCAAATAAATTGCATGCAATGAGGTACTTGCTGATCCAGTTGCTGCTTCAAGTACTCCTTCGACCTGGAGAA TTCTCAGAAGCTGCATCTGAACTTATTATATGTTGTAAGAAAGCTTTTGCTGCTTCTGATCTTCTTGACTCCTCGGGAGAAGAGGAGTTGGATAATGATG CAGATCCTAAGTTAATGGATGTCCTTGTGGACACATTCCTTTCATTGTTGCCACAGTCATCAGCTCCCATGCGCTCTGCTATTGAGCAGGTTTTTAAGCA CTTCTGTAATGATGTGACAAATGATGGACTTCTTCGGATGTTGCGTGTCATTAAGAAAGATTTGAAGCCAGCTAGACATCGGGAAGAAGGCAGTGAAGAT GATGAAGATTTTCTTGGTATTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGATGAAGCTGAGACAGGTGAAACAGGTGAAGATGAAG AACAGACTGATGATTGCGAGGTAGTGGTTGAAGTTGAAGAAGCTGGCAAAGAGCTGCCTGATGATTCTGATGATTCTGATGGAGGAATGGATGATGATGC AATGTTCCGGATGGACGCTTATCTTGCACAGATTTTTAAAGATAGAAAGAATCAGGCTGGGGGTGAAACTGCACAATCTCAGCTTGTTTTGTTTAAACTT CGTGTTCTTTCATTGCTGGAGGTTTACCTGCATGAAAATCCAGCTGAGCCTGGGGTTCTGATGGTTTACTCGAACTTGGCTCAGGCATTTGTTAATCCTC AGACTGCAGAAATCGGCGAGCAGCTCGGACAGCGAATATGGGGAATTTTGCAAAAGAAAATAATCAAAGCGAAGGACTTCCCAAAGGGTGATGCTGTGCT ACTACCTAATCTTGAATCTTTGTTAGAAAGGAACTTAAAGTTGGCATCAAAGCCATTGAAGAGAAAGAAATCTGCTGGTATCTTATCCAAGAAAAAACAG TCAGCCATGTGGAAACGACACAAAATGATTGTTTCCCTTGCTCAGGATTCCACCTTTTGGATTCTGAAAATTATTGATGCAAGAAATTTTTCAGAGTCTG AACTAAAAGGGGTTTTTGATATTTTCAAGGGTGAACTGGCACGGTATTTTGAGAGTAAAACATCTCAAATAAAATCTGAATTTTTAAAGGAAATATTTCG AAGAAGGCCATGGATTGGCCATCATCTCTTGGAGTTCCTTTTGGAGATATGTGGCAGTGCAAAGTCAGAGTTTCGTCGAGTTGGAGCACTTGATCTATTA ATGGAAATATTGAAGTCAATGGTTCCTTCTGGTAATGATGAAAGTAACCGCGATGCATCAAAGAAAATCTTGAAAAATCATCTGCAAAAACTCAGTCATC TGATAAAGGAGTTGGTAACAAAAATGCCAGAAAAGCAGTCAAGGCGGGCTGAAGTACGCAAGTTTTGTGGTAAAGTCTTCCGGTATGTGTCAACCTATGA CCTGACCAAATGTTTTCTTAAATATCTGGGCCCAGAAGCCGAAGCTGCTTGTGAATCTCAACTTGGAGAGCTGTATCTCAATTTCAAGGAGGTCGAGAGT TAA
AA sequence Show only first row Show all	>Potri.001G285600.2 pacid=42788804 polypeptide=Potri.001G285600.2.p locus=Potri.001G285600 ID=Potri.001G285600.2.v4.1 annot-version=v4.1 MGSKKRSSNSAEEVEDSDNTNTKTENANLEDMNKENASSNLSRKKMKKDKNKENETLDGDASKAGLYNNNSSSLKPMERRKKRKALDKERQHATSEDKDG KTKKMDVDSKVTENKEQMGASSSGVLPEFHIGVFTELISADVSVREAAVERLVMELQKVQKAYENAENKVVVEDGLKLEAKKDDGLNDCAPSVRYAVRRL IRGASSSRECARQGFALGLAVLIGTIPSIKVDSVMNLIVDMLEVSSSMKGQDIRDCLLGRLFAYGALARSGRLVEVWISDHNTLFIKEFTNVLISLASKK RYLQEPAVAIILELVEKLPTEAVLNHVLEAPRLCEWFEGDADAGNPDALLLALRIQEKVSVDSEMFGKILPHPFSPSRLFASDHLSSIINCLKESTFCQP RIHGVWPVLVNILLPDVVMQAEDVVSASNSLKKHKKSRKSSSSEEEVVKIVQCFREVVIEGSLLLSSHDRKHLAFHILLLLLPRLPASFIPHVLSHKIVQ CLMDILSTKDSWLYKVAQHFLKELSDWVGNDDVRRVAVIVALQRHSNARFDGITRTKTVRALVTEFKTESGCMLFIQNLMNMFVDEGCSSEEPSDPSQTD DNSEMGSVEDKDSNGAMENSDFLKSWVVESLPSILKHLKLEPEAKFRVQREILKFLAVQGLFSASLGSEVTSFELKEKFKWPKAATSSAICRMCIEQIQS LLANAQKIEGLHSLASGLEHSDLGSYFMRFLSTLGNIPSVSLFRSLSDEDEKAFEKLQEMETRLSREEKNFVIGAEANKLHAMRYLLIQLLLQVLLRPGE FSEAASELIICCKKAFAASDLLDSSGEEELDNDADPKLMDVLVDTFLSLLPQSSAPMRSAIEQVFKHFCNDVTNDGLLRMLRVIKKDLKPARHREEGSED DEDFLGIEEEEEEEEEEEEEVDEAETGETGEDEEQTDDCEVVVEVEEAGKELPDDSDDSDGGMDDDAMFRMDAYLAQIFKDRKNQAGGETAQSQLVLFKL RVLSLLEVYLHENPAEPGVLMVYSNLAQAFVNPQTAEIGEQLGQRIWGILQKKIIKAKDFPKGDAVLLPNLESLLERNLKLASKPLKRKKSAGILSKKKQ SAMWKRHKMIVSLAQDSTFWILKIIDARNFSESELKGVFDIFKGELARYFESKTSQIKSEFLKEIFRRRPWIGHHLLEFLLEICGSAKSEFRRVGALDLL MEILKSMVPSGNDESNRDASKKILKNHLQKLSHLIKELVTKMPEKQSRRAEVRKFCGKVFRYVSTYDLTKCFLKYLGPEAEAACESQLGELYLNFKEVES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64420			DNA polymerase V family (.1)		Potri.001G285600 [exp]	0	1
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	1.73	0.8452
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	2.00	0.8449
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	6.70	0.8352	Pt-SPY.1
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	8.48	0.8043
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	9.38	0.7948
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	10.00	0.8108
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	10.39	0.8071	SIN1.1,DCL902
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	11.66	0.8225
AT5G22450			unknown protein		Potri.004G203500 [exp]	17.14	0.8051
AT3G55160			unknown protein		Potri.004G128601 [exp]	18.89	0.7406

Compare expression of checked genes

Potri.001G285600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.