Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64430 270 / 6e-85 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 264 / 3e-82 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 150 / 8e-39 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 134 / 4e-34 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 121 / 6e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 109 / 1e-27 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT3G46920 114 / 1e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 114 / 2e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G70640 101 / 6e-25 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT3G24715 108 / 8e-25 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080200 [exp] 634 / 0 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.002G108800 [exp] 181 / 2e-52 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 152 / 5e-41 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 151 / 1e-40 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 139 / 3e-35 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 134 / 1e-33 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 126 / 6e-31 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 109 / 1e-27 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.003G176100 [exp] 114 / 1e-26 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035641 [exp] 276 / 5e-91 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 270 / 2e-85 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10010753 [exp] 190 / 1e-58 AT5G09620 182 / 5e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 153 / 4e-41 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 140 / 1e-36 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 131 / 2e-32 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 113 / 6e-28 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10037350 [exp] 114 / 9e-28 AT5G49920 197 / 8e-61 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035772 [exp] 114 / 1e-27 AT5G49920 196 / 2e-60 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10001314 [exp] 112 / 3e-26 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.001G285800.1 pacid=42790168 polypeptide=Potri.001G285800.1.p locus=Potri.001G285800 ID=Potri.001G285800.1.v4.1 annot-version=v4.1 ATGGAAAACAACTATTCTTTTAATTCATACCCGGATTCAGGCGACTCGTCGCCCAGATCTCGTGAAATTGATTTTGACAACCCGACACCATGGGAAGAAC AATCGCAACAATCTCAAAACTACAAAGTTAAGTTCATGTGTAGTTATGGGGGCAAGATCCACCCGCGTCCGCATGACAACCAGCTTTCTTACATGGGTGG AGAGACGAAAATCCTTGCGGTTGATCGAAACCTTAAATTCCCTGTCATGATAAGCAAACTCTCAGCTCTTTGTGGTGACACCGACGTGGCGTTCAAGTAC CAGCTCCCAGGTGAAGATCTTGACGCTTTAATATCTGTCACTAATGATGATGATCTAGAACACATGATGCATGAGTATGATCGTCTTTATCGTGCCTCTG CTAAGCCTGCTCGCATGAGGTTGTTTCTTTTCCCGGTTAACCCGTCACATGCAAGTTTCGGGTCCGATGGTGACAAATCGGATCGGGAGCGCTTTGTTGA GGCTTTGAATTCGGGTCCGAGTCAGGTTGTGGAAGCAACCAAAACGCCAGCGAATAACGTTGATTTCTTATTTGGTTTAGATAAAGGAGCTTCACCACCG CCTCCGCCTGTTAAAGTGCCAGATTTGCCTGAAATCCATGTTGGGTCTGGCCATGATGACAGGTTTATTGGGTCGGATCCTTCGAATTTGCAGGCCCACT TGCAGAGAATGCAAATTAGAGAACATGAGCAATCAATTGGGTGTAATAGAAAAAACATCGATGAGAATTTGGTTGGTGGTTATGCTGCCGCTGGCGGTGA TTATTACATGCAAAAATTGCCTGAAAAGGTGTCTCCGGCGAATCTACCCGTGACAATGCCACCCCAGGTGACTGCTCCACCAGGTTATTGGCCGGAGAAA CAGGCTGCTGGAGGTGGGTTTCCGGCAGCCGTGGCGGTGACCACTGCCCCGGGTCAAATGGAGCAACCCGTTTATATGATATCGGGTCCAGCTCAAGGAA CTGCTTATCACGCACCTCAAGTAATGCGACAGGTTACCGGACAAACGGGTCAAGCATATTACATGCAGAGAATGGGTGCTCCAGGGCATGGTCCTGATGT TTACAGGGAGCAGCCGGTATATAATGTGGTCCCACAACACCATCAGCCCCCACCACAGATGGGTCCCATGGGAGTTATGAGGCCCAGTGGGCCTGGGGTA GCAGTGACTGATGGCGGATATGCACAGGTAGCGTATGATAGTGCGGTTGGTAGACAGGTTTACTATACTGCGGCAGGTGGTGTAGTGCACCAGCATCAGC AGCATCAGCAGCTGCAGCAGCAGATGCCACCACAGTTTCAAGGTATTGGTGGTGGTGAGATGAGACACGTCGGCGGTGGTGGGCAATTGGCTCCTGAAGT CAAGGTTGTTACAACAAAGGTGACGCAGGCTTCAGTGTGA
AA sequence Show only first row Show all	>Potri.001G285800.1 pacid=42790168 polypeptide=Potri.001G285800.1.p locus=Potri.001G285800 ID=Potri.001G285800.1.v4.1 annot-version=v4.1 MENNYSFNSYPDSGDSSPRSREIDFDNPTPWEEQSQQSQNYKVKFMCSYGGKIHPRPHDNQLSYMGGETKILAVDRNLKFPVMISKLSALCGDTDVAFKY QLPGEDLDALISVTNDDDLEHMMHEYDRLYRASAKPARMRLFLFPVNPSHASFGSDGDKSDRERFVEALNSGPSQVVEATKTPANNVDFLFGLDKGASPP PPPVKVPDLPEIHVGSGHDDRFIGSDPSNLQAHLQRMQIREHEQSIGCNRKNIDENLVGGYAAAGGDYYMQKLPEKVSPANLPVTMPPQVTAPPGYWPEK QAAGGGFPAAVAVTTAPGQMEQPVYMISGPAQGTAYHAPQVMRQVTGQTGQAYYMQRMGAPGHGPDVYREQPVYNVVPQHHQPPPQMGPMGVMRPSGPGV AVTDGGYAQVAYDSAVGRQVYYTAAGGVVHQHQQHQQLQQQMPPQFQGIGGGEMRHVGGGGQLAPEVKVVTTKVTQASV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.001G285800 [exp]	0	1
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004200 [exp]	1.00	0.9169
AT1G64385			unknown protein		Potri.001G092300 [exp]	3.87	0.8931
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	4.47	0.9110	HMGB906,ATHMG.1
AT4G08790			Nitrilase/cyanide hydratase an...		Potri.010G214600 [exp]	5.56	0.8533
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G252600 [exp]	6.00	0.8816
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	7.21	0.8939	Pt-ATCNGC19.3
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	7.48	0.8870
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	7.93	0.8943
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.009G067700 [exp]	10.24	0.8716
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	10.58	0.8874

Compare expression of checked genes

Potri.001G285800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.