Plant FIBer expression Database

Potri.001G286000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
AT1G58280 394 / 8e-139 Phosphoglycerate mutase family protein (.1.2.3.4)
AT2G17280 364 / 5e-128 Phosphoglycerate mutase family protein (.1.2)
AT1G09935 257 / 4e-86 Phosphoglycerate mutase family protein (.1)
AT1G09932 202 / 2e-64 Phosphoglycerate mutase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G080300
[exp]
536 / 0 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.002G108500
[exp]
409 / 2e-144 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.002G108600
[exp]
306 / 1e-105 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020467
[exp]
429 / 3e-153 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10007093
[exp]
424 / 2e-151 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10032819
[exp]
381 / 2e-134 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10032821
[exp]
318 / 1e-109 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4)
Lus10032820
[exp]
232 / 2e-76 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2)
Lus10001381
[exp]
71 / 3e-15 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00300 His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence
>Potri.001G286000.4 pacid=42791260 polypeptide=Potri.001G286000.4.p locus=Potri.001G286000 ID=Potri.001G286000.4.v4.1 annot-version=v4.1
ATGGATAGTGGTCCAGATCCAAGTTTGTATCCATTGCACCGCTGCAAAACAATTCATGTGGTGAGGCATGCACAAGGATTGCATAATGTCGAGGGAGAAA
AGAACTACAAAGCATACTTGAATCCTGAATATTTAGATGCTCCCCTCACTCAACTAGGCTGGCAGCAGGTTAATTATTTGCGGAAGCATGTCCATGCATC
TGGGCTCTCCAAGAGGGTTGAATTAGTTGTTACATCCCCATTGCTCAGGACATTGCAAACAGCTGTTGGAGTTTTTGGTGGGGAGGGCTACACGGATGGG
ATGAATGCACTTCCACTAATGGTGGCAAATGTTGGAAACAGTGGTCGAGAAGCAATTTCAAGTCGTAATTCGCCACCATTCATTGCCGTAGAAGATTGTC
GAGAACATTTTGGTGTACATCCTTGTGACAAGAGACACAATGTCAGCGAGTATCAATTTCTTTTTCCTGCAGTTGACTTTTCACTGATAGAAACTGATGA
GGATGTACTGTGGAAGGCCGATGTGAGAGAGACAACTGAAGAACTGGCTGCAAGGGGACTGAAGTTTTTAAACTGGCTGTGGACAAGGAAAGAGAAGGAG
ATAGCCATTGTTACCCATAGCGGGTTTTTGGTTCATACATTGCGTGCATTTGGAACTGACTGTCATCCATTGGTGAAGAAAGAAATGGACACACGCTTTG
CTAATTGTGAGCTTCGATCTATGGTCATTGTTGACAGAAGTATGATTGGATCAGATGTTTCAACGACTAACTATCCTGGAAAGATTCCTTCCGGGCTGGA
TTTCCCTAGTGATGTTGGGGAGGAGGAAGCACCCAATTCAATTTAG
AA sequence
>Potri.001G286000.4 pacid=42791260 polypeptide=Potri.001G286000.4.p locus=Potri.001G286000 ID=Potri.001G286000.4.v4.1 annot-version=v4.1
MDSGPDPSLYPLHRCKTIHVVRHAQGLHNVEGEKNYKAYLNPEYLDAPLTQLGWQQVNYLRKHVHASGLSKRVELVVTSPLLRTLQTAVGVFGGEGYTDG
MNALPLMVANVGNSGREAISSRNSPPFIAVEDCREHFGVHPCDKRHNVSEYQFLFPAVDFSLIETDEDVLWKADVRETTEELAARGLKFLNWLWTRKEKE
IAIVTHSGFLVHTLRAFGTDCHPLVKKEMDTRFANCELRSMVIVDRSMIGSDVSTTNYPGKIPSGLDFPSDVGEEEAPNSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64460 Phosphoglycerate mutase family... Potri.001G286000
[exp]
0 1
AT3G15690 Single hybrid motif superfamil... Potri.001G172600
[exp]
3.46 0.8157
AT4G38020 tRNA/rRNA methyltransferase (S... Potri.005G147600
[exp]
8.48 0.7896
AT2G40860 protein kinase family protein ... Potri.016G030800
[exp]
9.32 0.7717
AT4G28220 NDB1 NAD(P)H dehydrogenase B1 (.1) Potri.013G147200
[exp]
10.34 0.8463
AT2G32280 Protein of unknown function (D... Potri.007G119600
[exp]
13.00 0.7871
AT5G48960 HAD-superfamily hydrolase, sub... Potri.010G002900
[exp]
23.62 0.7803
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.011G063300
[exp]
25.37 0.7725
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.008G093901
[exp]
26.83 0.8267
AT1G45207 Remorin family protein (.2) Potri.002G125200
[exp]
29.18 0.8127
AT5G26800 unknown protein Potri.005G011800
[exp]
30.29 0.7587

Potri.001G286000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.