Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64470 549 / 0 TBL12 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) AT2G14530 301 / 4e-99 TBL13 TRICHOME BIREFRINGENCE-LIKE 13 (.1) AT3G62390 178 / 3e-51 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G12060 179 / 6e-51 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G20590 175 / 7e-50 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G06700 168 / 2e-46 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G11570 159 / 2e-44 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 158 / 2e-44 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT1G60790 160 / 5e-44 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G06080 154 / 4e-42 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082500 [exp] 289 / 1e-94 AT2G14530 563 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Potri.002G195800 [exp] 186 / 2e-53 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 172 / 7e-49 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.010G043300 [exp] 172 / 4e-48 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 169 / 2e-47 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.016G074800 [exp] 163 / 5e-46 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.016G059300 [exp] 162 / 2e-44 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.008G203900 [exp] 160 / 2e-44 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.001G010900 [exp] 160 / 6e-44 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020489 [exp] 578 / 0 AT5G64470 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10007108 [exp] 577 / 0 AT5G64470 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10012477 [exp] 306 / 4e-101 AT2G14530 558 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Lus10002430 [exp] 176 / 5e-50 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10003734 [exp] 164 / 7e-46 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10011932 [exp] 163 / 1e-45 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10041219 [exp] 162 / 3e-45 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10021066 [exp] 164 / 4e-45 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10028025 [exp] 157 / 4e-43 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10013035 [exp] 158 / 5e-43 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.001G286100.1 pacid=42793684 polypeptide=Potri.001G286100.1.p locus=Potri.001G286100 ID=Potri.001G286100.1.v4.1 annot-version=v4.1 ATGCCACCAAAACTCCCACCAGCACTCCCATACTTGATCCTCCTCTCCTTCCTCTTCTTCTACATCTACTCCACTTCTCTCCTCCCTCACTCCACCACCA CCACCACCACCACAACAACAAAAACAAAAACAACTTCCTGTAATCTCTTCAAAGGCAACTGGGTCCTAGACCGCACCAAATCCACAAAACCTCTTTACGA TGAGTCCTGCCCATTTCACAGAAATGCATGGAATTGCCTTAGAAACCAGAGAGAAAACATGGGTTTGATTAATTCTTGGAGATGGGTACCTAAAGATTGT GAGTTGCCAAAGATTGATCCTGAGAGGTTTCTTGAGTTGATGAGGAATAGGAATATCGGATTGGTTGGAGATTCTTTGAATGAGAATTTTTTGGTTTCTT TCTTGTGTATTCTTAGAGTTGCTGATGGCAGTGCTAAGAAGTGGAAAAGGAAAGGAGCTTGGAGAGGTGCTTATTTCCCTAAGTTCAATGTCACCGTTGC TTATCACCGGGCTGTTTTGCTTTCCAAATACGAGTGGCAGCCAAAACAGCCTACTGTGAATGATGGACCGAAGGGAATATATCGTGTAGATGTTGATATA CCTGCAGAAGATTGGGCCACCATCACCGACTACTATGATGTTCTCATCTTTAATACTGGTCATTGGTGGGGTTATGACAAATTCCCAAAAGAGACGCCTC TTGTTTTCTATCGTGCTGGGCAACCAATACTTCCTCCCCTTGGATTGTTTGAAGGACTTAAAGTTGTTCTTGAGAGTATGGTCTCGTACATTGAAAGAGA AGTTCCTCGCAAGACACTCAAGTTTTGGCGGTTGCAATCGCCACGCCATTTTTATGGTGGTGAGTGGAATCAAAATGGCAGTTGCTTGCTTAATGAGCCC CTTAAGGAACATGAGCTGGACTTGTGGTTTGATCCCAGCAACAATGGAGTGAATAAAGAGGCAAGAAAGATAAATCACGTGATTGAAGAGACGCTGCAAG GTACAGATATCCGATTGCTGGATCTTACTCATTTGAGTGAGTTTAGGGCAGATGCCCACCCAGCGATTTGGTTAGGAAAGAAGGATGCTGTGGCAATATG GGGTCAGGACTGCATGCATTGGTGCCTCCCTGGTGTCCCGGACACATGGGTTGATATCGTCTCAGGGCTGATTCACAATAGCTTGTAG
AA sequence Show only first row Show all	>Potri.001G286100.1 pacid=42793684 polypeptide=Potri.001G286100.1.p locus=Potri.001G286100 ID=Potri.001G286100.1.v4.1 annot-version=v4.1 MPPKLPPALPYLILLSFLFFYIYSTSLLPHSTTTTTTTTTKTKTTSCNLFKGNWVLDRTKSTKPLYDESCPFHRNAWNCLRNQRENMGLINSWRWVPKDC ELPKIDPERFLELMRNRNIGLVGDSLNENFLVSFLCILRVADGSAKKWKRKGAWRGAYFPKFNVTVAYHRAVLLSKYEWQPKQPTVNDGPKGIYRVDVDI PAEDWATITDYYDVLIFNTGHWWGYDKFPKETPLVFYRAGQPILPPLGLFEGLKVVLESMVSYIEREVPRKTLKFWRLQSPRHFYGGEWNQNGSCLLNEP LKEHELDLWFDPSNNGVNKEARKINHVIEETLQGTDIRLLDLTHLSEFRADAHPAIWLGKKDAVAIWGQDCMHWCLPGVPDTWVDIVSGLIHNSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Potri.001G286100 [exp]	0	1
AT4G32050			neurochondrin family protein (...		Potri.018G022800 [exp]	6.55	0.7239
AT5G04010			F-box family protein (.1)		Potri.004G076800 [exp]	13.30	0.8018
AT3G11230			Yippee family putative zinc-bi...		Potri.016G115000 [exp]	13.89	0.6810
AT2G33735			Chaperone DnaJ-domain superfam...		Potri.002G103900 [exp]	15.29	0.7374
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.018G100700 [exp]	15.87	0.7728
					Potri.019G040151 [exp]	17.74	0.7952
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	19.89	0.7508	Pt-ATRLI1.1
AT4G21610		LOL2	lsd one like 2 (.1)		Potri.004G043100 [exp]	22.18	0.6603
AT1G26800			RING/U-box superfamily protein...		Potri.010G168300 [exp]	23.02	0.7985
AT1G79510			Uncharacterized conserved prot...		Potri.008G083400 [exp]	23.06	0.7646

Compare expression of checked genes

Potri.001G286100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.