Plant FIBer expression Database

Potri.001G286600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64500 549 / 0 Major facilitator superfamily protein (.1)
AT2G22730 520 / 0 Major facilitator superfamily protein (.1)
AT5G65687 496 / 9e-173 Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G081100
[exp]
760 / 0 AT5G64500 617 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019244
[exp]
551 / 0 AT2G22730 638 / 0.0 Major facilitator superfamily protein (.1)
Lus10011580
[exp]
542 / 0 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1)
Lus10003528
[exp]
433 / 5e-148 AT2G22730 495 / 8e-173 Major facilitator superfamily protein (.1)
Lus10002935
[exp]
288 / 1e-91 AT5G64500 340 / 7e-112 Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF03137 OATP Organic Anion Transporter Polypeptide (OATP) family
Representative CDS sequence
>Potri.001G286600.9 pacid=42788191 polypeptide=Potri.001G286600.9.p locus=Potri.001G286600 ID=Potri.001G286600.9.v4.1 annot-version=v4.1
ATGGCGAGTAGTTCTACTGCATTATCACCTCCTAAACCTTCATGGATAACTCCAGAAAGGCTGCTAGCTATCTTTTGTGTGATCAACTTGATAAATTATG
TGGATAGAGGAGCGATTGCAAGCAATGGTGTCAATGGGAGTCGTAGAAGCTGCTCAAAAAGTGGTACATGCACATCCGGCAGAGGAATACAAGGGGACTT
TAACCTGAGCAATTTTGAAGATGGAGTTTTATCCTCAGCTTTCATGGTTGGACTTCTCGTGGCTTGCCCAATATTTGCATCATTAGCAAAGAGCGTGAAT
CCATTTAGGCTCATTGGAGTTGGATTATCAGTTTGGACAGTTGCCGTTGTTGGTTGTGGGTTTTCAATTAATTTCTGGAGCATTACAGTCTGCCGCATGC
TAGTCGGTGTTGGTGAGGCTTCATTTATAAGTCTTGCAGCCCCTTTTATCGATGATAACGCCCCTCCTGCCAAGAAAACTTTATGGCTTGGAATGTTTTA
CATGTTTATACCAGCTGGCTACGCTGCTGGCTACGTATATGGTGGACTGGTTGGTGACCATTTCAGTTGGCGCTACGCTTTCTTTGGAGAGGCGGTTTTG
ATGCTTCCATTTGCTGTTTTAGGTTTTGTTATGAAACCTTTGCAGTTGAAAGGTTTTGCTCCTGCTGAATCTACCGAAGCGCTGACATCCATAGAGACAA
CTTCTTTGGAAGTTCAAGCAGATACAGATGTCTCTGTTGTCAAAGGCTCAATGAAATCTTCCAAGTCAAAATGTGCATTTGTTGATTTGAAGCAATTCTC
AAGATTTATGAAAGACTTGAAAGTGCTTTTGCTTGACAAGGTTTATGTAGTGAATGTTATAGGTTACATAGTGTACAATTTCGTCCTTGGTGCATATTCA
TATTGGGGACCTAAAGCAGGCTATAGCATTTATAACATGAGCAATGCAGATCTGATATTTGGAGGAATTACCATAGTCTGTGGTATAGTTGGCACACTAG
CAGGGGGTTATGTTCTGGATCTCATAAATTCCACAATTTCTAATGCTTTTAAGCTTCTTTCAGCAGTTACATTTGCCGGGGCAATATTTTGTTTCAGTGC
CTTCTGTTTTAAGAGCATGTATCCCTTCCTTGCCCTTTTTGCTATTGGTGAACTATTTGTCTTTGCAACTCAGGCTCCTGTAAATTTCATATGTCTTCAC
TGTGTTAAACCAAGTTTGAGACCAATATCTATGGCTATCTCCACTGTTGCAATTCACCTCTTTGGAGATGTGCCTTCCTCACCACTTGTTGGTGTTCTCC
AGGATCAAACTAACAACTGGAGGAAGACTGCTCTTATTCTGACATTCATTTTGTTTCCAGCAGCTGTGATATGGTTTATAGGTATATTTCTGCACAGCGT
GGATAGATTTGATGAAGCAAGTGAGCATCCTGAAGTGACTACAACTGACGGATCTGACACAACGCCTTTGCTTGATAGGAAGGCAGCAGGAACAACAGAA
ACAGAACCATGA
AA sequence
>Potri.001G286600.9 pacid=42788191 polypeptide=Potri.001G286600.9.p locus=Potri.001G286600 ID=Potri.001G286600.9.v4.1 annot-version=v4.1
MASSSTALSPPKPSWITPERLLAIFCVINLINYVDRGAIASNGVNGSRRSCSKSGTCTSGRGIQGDFNLSNFEDGVLSSAFMVGLLVACPIFASLAKSVN
PFRLIGVGLSVWTVAVVGCGFSINFWSITVCRMLVGVGEASFISLAAPFIDDNAPPAKKTLWLGMFYMFIPAGYAAGYVYGGLVGDHFSWRYAFFGEAVL
MLPFAVLGFVMKPLQLKGFAPAESTEALTSIETTSLEVQADTDVSVVKGSMKSSKSKCAFVDLKQFSRFMKDLKVLLLDKVYVVNVIGYIVYNFVLGAYS
YWGPKAGYSIYNMSNADLIFGGITIVCGIVGTLAGGYVLDLINSTISNAFKLLSAVTFAGAIFCFSAFCFKSMYPFLALFAIGELFVFATQAPVNFICLH
CVKPSLRPISMAISTVAIHLFGDVPSSPLVGVLQDQTNNWRKTALILTFILFPAAVIWFIGIFLHSVDRFDEASEHPEVTTTDGSDTTPLLDRKAAGTTE
TEP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64500 Major facilitator superfamily ... Potri.001G286600
[exp]
0 1
AT3G13330 PA200 proteasome activating protein ... Potri.001G470600
[exp]
3.60 0.7077
AT3G11397 PRA1.A3 prenylated RAB acceptor 1.A3 (... Potri.008G060400
[exp]
4.89 0.7019
AT3G61600 ATPOB1 POZ/BTB containin G-protein 1 ... Potri.003G135300
[exp]
6.48 0.6639
AT5G56460 Protein kinase superfamily pro... Potri.003G222600
[exp]
8.77 0.6270
AT3G57890 Tubulin binding cofactor C dom... Potri.006G059100
[exp]
9.38 0.6546
AT4G17670 Protein of unknown function (D... Potri.001G148700
[exp]
10.39 0.7067
AT3G49290 ABIL2 ABL interactor-like protein 2 ... Potri.003G142800
[exp]
22.36 0.6780
AT4G35300 TMT2 tonoplast monosaccharide trans... Potri.004G207100
[exp]
30.41 0.6777
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Potri.013G031700
[exp]
31.11 0.6026 Pt-NHX2.2
AT3G58530 RNI-like superfamily protein (... Potri.006G195800
[exp]
31.46 0.5624

Potri.001G286600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.