Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 216 / 5e-68 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 172 / 2e-51 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22760 171 / 8e-51 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 160 / 1e-46 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 83 / 3e-17 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 83 / 3e-17 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G29930 78 / 9e-17 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G12860 78 / 9e-16 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 77 / 2e-15 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G01260 77 / 3e-15 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081400 [exp] 576 / 0 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 227 / 1e-72 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 217 / 9e-68 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 85 / 5e-18 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 81 / 1e-16 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G208600 [exp] 81 / 2e-16 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 76 / 4e-15 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G221100 [exp] 75 / 8e-15 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 75 / 1e-14 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020503 [exp] 277 / 6e-93 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 274 / 1e-91 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 234 / 3e-74 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 226 / 1e-71 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 224 / 2e-71 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 201 / 6e-62 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 170 / 1e-49 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030970 [exp] 88 / 5e-19 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 84 / 1e-18 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 79 / 3e-17 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G287200.1 pacid=42791123 polypeptide=Potri.001G287200.1.p locus=Potri.001G287200 ID=Potri.001G287200.1.v4.1 annot-version=v4.1 ATGGAGACTTCATCAGTTACAGCTTTATGTGAACTGGGAATGGAGGATTCAAGCTTCACCAACCAGTGGTTCATGAACTCTCTTGATGATACCAGCTTAC TACCATTTGCTGCTGCATTTGGAGAGAACATACATCACTCTTTCTCTCACCAAAACTTCAACCTCAAAACCTCCATGGATAGTGTTAGACCAACAAAACA ACTGAGAACTGATCATTTGTCAAACCCACAACCTGCCTTTTCTCCTAACATTCTTTCCTTTGTCAATTCCAACCACGCAAATCAAATGGGATTGATGAAG CCTAAAGAGGAGGCAGTGTGTTCTAAGAGCATCAACAATCTCCCTTCTGACATGGTAGTTTCTCAAGATTCCTTTGGGAACCAATACTATGCATTCAAGG CCTCCCAAGGACCTAAGATGATTAGCGCGAACGGTACTAGACTTTCTCAAAGTCAAGATCACATTATAGCAGAAAGGAAGCGGCGGGAGAAGCTCAGTCA ACGATTCATAGCTTTATCTGCTGTAGTTCCTGGACTAAAAAAGATGGATAAAGCTTCTGTTCTAGGAGATGCTATCAAGTACTTGAAACAATTGCAAGAG AGAGTTAAGACACTTGAGGAACAAACAAAAAGGAAAACCATGGAATCAGTGGTTATTGTGAAGAAATCTCATGTCTATGTTGATGAGGGTGGTGAAAACT CTTCCTCAGATGTGTCTAAAGGACCTATTCATGAGACATTGCCAGAACTTGAAGCAAGATTCTGCGACAAACATGTCCTCATAAGAATTCACTGCAAGAA AAACAAAGGAGTTTTGGAGAAAACAGTGGCTGAAGTTGAGAAACTCCACCTATCAGTTATCAATAGCAGTGTCCTTACATTTGGGACTTGTGCTCTTGAT GTTACTATTATTGCACAGATGGATATAGACTTCAACATGTCAGTGAAGGATCTAGTGAAGACTTTACGCTCAGCTTTCCAGTATTTCATGTGA
AA sequence Show only first row Show all	>Potri.001G287200.1 pacid=42791123 polypeptide=Potri.001G287200.1.p locus=Potri.001G287200 ID=Potri.001G287200.1.v4.1 annot-version=v4.1 METSSVTALCELGMEDSSFTNQWFMNSLDDTSLLPFAAAFGENIHHSFSHQNFNLKTSMDSVRPTKQLRTDHLSNPQPAFSPNILSFVNSNHANQMGLMK PKEEAVCSKSINNLPSDMVVSQDSFGNQYYAFKASQGPKMISANGTRLSQSQDHIIAERKRREKLSQRFIALSAVVPGLKKMDKASVLGDAIKYLKQLQE RVKTLEEQTKRKTMESVVIVKKSHVYVDEGGENSSSDVSKGPIHETLPELEARFCDKHVLIRIHCKKNKGVLEKTVAEVEKLHLSVINSSVLTFGTCALD VTIIAQMDIDFNMSVKDLVKTLRSAFQYFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.001G287200 [exp]	0	1
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178300 [exp]	4.79	0.6777
AT2G18420			Gibberellin-regulated family p...		Potri.005G239000 [exp]	15.74	0.6739
AT5G18910			Protein kinase superfamily pro...		Potri.008G197800 [exp]	51.80	0.6276
AT4G33440			Pectin lyase-like superfamily ...		Potri.007G105800 [exp]	58.44	0.5950
AT1G15780			unknown protein		Potri.003G025500 [exp]	63.16	0.6210
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.001G095600 [exp]	74.93	0.5663
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	80.62	0.5909
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.012G086700 [exp]	93.96	0.5652	WNK3.2
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.016G075300 [exp]	102.51	0.5739
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.008G040700 [exp]	119.81	0.5725

Compare expression of checked genes

Potri.001G287200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.