Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MDHG.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22780 588 / 0 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 583 / 0 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT1G53240 423 / 7e-149 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 419 / 5e-147 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT3G47520 391 / 3e-135 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT3G53910 64 / 2e-12 malate dehydrogenase-related (.1) AT4G17260 58 / 3e-09 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081600 [exp] 680 / 0 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 587 / 0 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.011G096300 [exp] 428 / 6e-151 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 422 / 3e-148 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.001G376500 [exp] 420 / 1e-147 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.017G102000 [exp] 409 / 3e-142 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 406 / 5e-141 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 405 / 2e-140 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 248 / 2e-81 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039642 [exp] 600 / 0 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 586 / 0 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 525 / 0 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10020501 [exp] 488 / 1e-174 AT5G09660 482 / 2e-172 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) Lus10017939 [exp] 431 / 9e-152 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 427 / 4e-150 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10034458 [exp] 397 / 2e-137 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 396 / 6e-137 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10000275 [exp] 386 / 4e-133 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10013680 [exp] 381 / 1e-132 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00056 [poplar] [flax] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G287400.5 pacid=42793184 polypeptide=Potri.001G287400.5.p locus=Potri.001G287400 ID=Potri.001G287400.5.v4.1 annot-version=v4.1 ATGGAGTCCATCAGAGAGGCTAGCCAAAGGATTGCAAGGATATCAGCTCATCTCCAACCTCCAAATTCCCAGACAGAGGAAAGCTGTGTTTTGAAGAGAG CTGATTGCAGAGCGAAAGGAGGGGCACCAGGGTTCAAAGTCGCTATATTGGGTGCTGCTGGAGGAATTGGCCAGCCTCTTGCGATGCTTATGAAGATGAA TCCTTCGGTCTCTGTTCTTCATCTTTATGATGTTGTCAATACTCCTGGTGTCACTGCTGATATTGGTCACATGGACACTGGCGCTGTGGTTCGGGGTTTC CTAGGGCAGCCGCAGCTTGAGAATGCTCTTACAGGGATGGACCTTGTGATCATACCTGCTGGCGTGCCAAGGAAGCCTGGAATGACTAGAGATGATCTAT TCAACATCAATGCTGGGATCGTCATTACTCTTTGCGAAGGAATTGCAAAGTGCTGCCCGAATGCAATTGTCAACTTGATCAGTAATCCAGTCAATTCTAC AGTTCCAATTGCAGCAGAGGTTTTCAAGAAAGCTGGAACTTATGATCCAAAGCGACTTCTAGGAGTTACAATGCTTGATGTTGTGAGAGCAAACACATTC GTGGCAGAAGTTCTGGGACTTCATCCTAAGGAAGTTGATGTTCCAGTTGTTGGAGGCCATGCTGGAGTCACAATTTTGCCTCTTCTGTCACAGGTTAAGC CTCCTTCCTCCTTCACCCCTGAAGAAACTGAATACCTGACCAAACGAATTCAAGATGGTGGAACAGAGGTTGTTCAGGCGAAAGCTGGGGCTGGCTCTGC AACACTGTCAATGGCGTATGCAGCTGTTAAATTTGCAGATGCCTGCCTTCGTGGCTTGAGGGGAGATGCTGGTGTTGTGGAATGTGCATTTGTAGCTTCT GAGGTGACAGAACTCCCATTCTTCGCAACCAAGGTACGACTTGGCCGCAGAGGAGCCGAGGAAGTCTATCAACTTGGTCCCCTAAACGAATATGAGAGGG TGGGGTTGGGAAGGGCTAAAAAAGAGTTGGCAGAAAGCATTCAGAAGGGGGTTTCCTTCATCAGGAAATAG
AA sequence Show only first row Show all	>Potri.001G287400.5 pacid=42793184 polypeptide=Potri.001G287400.5.p locus=Potri.001G287400 ID=Potri.001G287400.5.v4.1 annot-version=v4.1 MESIREASQRIARISAHLQPPNSQTEESCVLKRADCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPSVSVLHLYDVVNTPGVTADIGHMDTGAVVRGF LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVITLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTF VAEVLGLHPKEVDVPVVGGHAGVTILPLLSQVKPPSSFTPEETEYLTKRIQDGGTEVVQAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS EVTELPFFATKVRLGRRGAEEVYQLGPLNEYERVGLGRAKKELAESIQKGVSFIRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.001G287400 [exp]	0	1	MDHG.2
AT5G09995			unknown protein		Potri.010G003700 [exp]	2.44	0.9803
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	3.16	0.9843
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Potri.001G068300 [exp]	3.46	0.9806
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	5.00	0.9787	NHD1.2
AT5G11840			Protein of unknown function (D...		Potri.006G229600 [exp]	5.56	0.9596
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G058400 [exp]	6.00	0.9787	PtrTrxm3
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G071800 [exp]	8.36	0.9740
					Potri.010G145700 [exp]	9.74	0.9644
AT3G61550			RING/U-box superfamily protein...		Potri.002G165200 [exp]	11.66	0.9509
AT4G27700			Rhodanese/Cell cycle control p...		Potri.012G020700 [exp]	11.95	0.9682

Compare expression of checked genes

Potri.001G287400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.