Plant FIBer expression Database

Potri.001G287500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G137850
[exp]
306 / 3e-106 AT2G48090 44 / 1e-05 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008165
[exp]
41 / 0.0005 AT2G43990 74 / 3e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G287500.1 pacid=42787906 polypeptide=Potri.001G287500.1.p locus=Potri.001G287500 ID=Potri.001G287500.1.v4.1 annot-version=v4.1
ATGGAAAGGAATAGCAGTAGCTACCCCAAGGATGTGTGTGAAAAAATCTACAAAGTATTTTCTGTCTCTCCAGCTTTCCGAGCAATTCGCCGCGTCTCAA
CTCGCCCACAAGATCCTAGGCCTGCTAGACCTGCTCCAAATTCATCACAACCACCCTCTCGTTCTAAGAAAATCATTGATACCCAATCCCAAACATATTC
TCCAAGAAAACATCGCAAGTCTGCAGAGGGTGCCAAAAGCCATGACACTCTTAGGAATAGAGAAGCAGCAGAAATGGTTCCTGTCATCTTCGATTTTTCA
AGCCAGGGTGTTCCAGAAAATGGTAAATCCAAGTTAGCTACTACTCCACTTCCTTCCATTCCAAAGAACACCCAAGTTGCTTCCAGGATGGAACCTGAAG
CTAAAGCATCAAGCATGGCTGTGCCGCAAAGTCCTAGCCAAGGAAACAAAGCCAATAATCCCAAGGTTGAATCACCTCAGCATAACAAGTTGGAAGAAGG
TAGCAACAAGCTAGGGATGCACATTGAAGATATATTCACTGACTACATCAATCGTACAAAGATTAAGCTTAAGAGGACTTTGTCAGGTGCTGGACATGAA
AACCAACATGCTAGCTCAGGAAAAGATAAGTTTACGGATTACGTTGACTGTGCCAAGGTTAAGCTTAGAACTACTTCAAGTATTGGCGGTGGAAAGTCTT
TAACTCCTTTCAAGTGA
AA sequence
>Potri.001G287500.1 pacid=42787906 polypeptide=Potri.001G287500.1.p locus=Potri.001G287500 ID=Potri.001G287500.1.v4.1 annot-version=v4.1
MERNSSSYPKDVCEKIYKVFSVSPAFRAIRRVSTRPQDPRPARPAPNSSQPPSRSKKIIDTQSQTYSPRKHRKSAEGAKSHDTLRNREAAEMVPVIFDFS
SQGVPENGKSKLATTPLPSIPKNTQVASRMEPEAKASSMAVPQSPSQGNKANNPKVESPQHNKLEEGSNKLGMHIEDIFTDYINRTKIKLKRTLSGAGHE
NQHASSGKDKFTDYVDCAKVKLRTTSSIGGGKSLTPFK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G287500
[exp]
0 1
AT1G75250 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-... Potri.007G023800
[exp]
1.41 0.9574
AT1G22540 Major facilitator superfamily ... Potri.019G079600
[exp]
2.82 0.9288
AT4G25640 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, ... Potri.015G147600
[exp]
2.82 0.9461
AT3G53690 RING/U-box superfamily protein... Potri.006G123500
[exp]
6.55 0.8977
AT5G53110 RING/U-box superfamily protein... Potri.003G139900
[exp]
9.94 0.9401
AT4G18960 MADS AG AGAMOUS, K-box region and MADS... Potri.004G064300
[exp]
12.44 0.9039
AT1G74640 alpha/beta-Hydrolases superfam... Potri.017G115100
[exp]
23.66 0.9188
AT1G06460 ACD31.2, ACD32.... ALPHA-CRYSTALLIN DOMAIN 31.2, ... Potri.014G141500
[exp]
27.71 0.9096 Pt-ACD32.1
AT2G35660 CTF2B, CTF2A FAD/NAD(P)-binding oxidoreduct... Potri.001G152600
[exp]
30.16 0.9306 Pt-CTF2.2
AT4G23200 CRK12 cysteine-rich RLK (RECEPTOR-li... Potri.018G111800
[exp]
30.65 0.9229

Potri.001G287500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.