Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24730 245 / 8e-85 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) AT5G08290 80 / 9e-20 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G072700 [exp] 81 / 4e-20 AT5G08290 293 / 5e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022811 [exp] 258 / 1e-89 AT3G24730 261 / 7e-91 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10011878 [exp] 256 / 4e-89 AT3G24730 258 / 1e-89 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10017390 [exp] 80 / 1e-19 AT5G08290 290 / 1e-102 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010188 [exp] 79 / 4e-19 AT5G08290 293 / 4e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF02966 [poplar] [flax] DIM1 Mitosis protein DIM1
Representative CDS sequence Show only first row Show all	>Potri.001G287600.7 pacid=42787609 polypeptide=Potri.001G287600.7.p locus=Potri.001G287600 ID=Potri.001G287600.7.v4.1 annot-version=v4.1 ATGAGTGATTACCTATCAACAACGCTGCTTACAAAGAAGAAAGAGATCGACTGCGTTATCAGAGATGCCATCGACAAGGTCCTTGTCCTCCGCTTCGGCC GCGCCTCTGATCCCGTTTGTCTCCATCTCGATGACATTTTATCGAAATCAGCTCGTGAAGTTTCAAAATTCGCAACAATAGCCTTGGTAGACATTGATTC CGAGGATGTTCAAGTTTACGTCAACTATTTTGACATAACTTTGGTTCCTTCTACTGTTTTCTTCTTCAACGCTCATCATATGAAAATGGATTCTGGGACT GCAGATCACACTAAATGGGTTGGTGCTTTTCACAGAAAACAAGATTTCATTGATGTAGTTGAGGCCATATTCAGAGCAGCCATGAAAGGCAAGCTGATCG CTAATTGCCCCCTGCCACCAGAGCGGATACCAAAATATGAGTTGTTGTACAAAAACTTGTAA
AA sequence Show only first row Show all	>Potri.001G287600.7 pacid=42787609 polypeptide=Potri.001G287600.7.p locus=Potri.001G287600 ID=Potri.001G287600.7.v4.1 annot-version=v4.1 MSDYLSTTLLTKKKEIDCVIRDAIDKVLVLRFGRASDPVCLHLDDILSKSAREVSKFATIALVDIDSEDVQVYVNYFDITLVPSTVFFFNAHHMKMDSGT ADHTKWVGAFHRKQDFIDVVEAIFRAAMKGKLIANCPLPPERIPKYELLYKNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24730			mRNA splicing factor, thioredo...		Potri.001G287600 [exp]	0	1
AT1G33810			unknown protein		Potri.019G076400 [exp]	11.04	0.7121
AT4G36720		HVA22K	HVA22-like protein K (.1)		Potri.009G113400 [exp]	11.87	0.6568
AT3G06140			RING/U-box superfamily protein...		Potri.010G030600 [exp]	12.00	0.6077
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	12.64	0.6517
AT5G57000			unknown protein		Potri.006G148000 [exp]	14.14	0.6254
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.019G089800 [exp]	19.28	0.6230
					Potri.017G061800 [exp]	20.19	0.6532
AT2G14830			Regulator of Vps4 activity in ...		Potri.009G090100 [exp]	26.60	0.6482
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Potri.006G240900 [exp]	30.98	0.5890
AT5G50930			Histone superfamily protein (....		Potri.015G105900 [exp]	38.78	0.6102

Compare expression of checked genes

Potri.001G287600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.