Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14260 575 / 0 PIP proline iminopeptidase (.1.2) AT3G61540 44 / 0.0001 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134800 [exp] 52 / 2e-07 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 44 / 0.0001 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 43 / 0.0002 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010743 [exp] 611 / 0 AT2G14260 565 / 0.0 proline iminopeptidase (.1.2) Lus10035652 [exp] 596 / 0 AT2G14260 560 / 0.0 proline iminopeptidase (.1.2) Lus10011204 [exp] 55 / 3e-08 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 49 / 3e-06 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 47 / 9e-06 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 47 / 1e-05 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 46 / 2e-05 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 46 / 3e-05 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 45 / 6e-05 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.001G287700.1 pacid=42791413 polypeptide=Potri.001G287700.1.p locus=Potri.001G287700 ID=Potri.001G287700.1.v4.1 annot-version=v4.1 ATGCCCACTATCATGAGTTTATTAGGCTTCACTAGTTCACTCGTCTCTTTCGCACCTCCTCCTCCCCTTCCTTCCCTCACTCCTCTTCTCCCTTCACTCT CCTGTCTTTCCATCAGAAGAAGGAATCCTTTACTGTTAAGTGTGAGAAATCTTGATTACAAGTGTGAATCACAGGCAAGTGGGTTGTACATGGAACCAGT CAAGGAGTCAGTGGAATTAAATAGGAATCTTTATGCAAATATAGAGCCTTATGAGACTGGTTTTTTGAAGGTCTCTGATCTTCACTCAATCTACTATGAA CAATCAGGAAGTCCCTCTGGGCATCCCGTTGTCTTTCTTCATGGGGGCCCAGGAGGAGGAACTGCACCGAGTAACCGAAGATTTTTTGATCCTGAATTTT ACAGAATCATTTTGTTTGATCAGCGAGGTGCCGGAAAGAGCACACCCCATGCTTCCTTGGAGGAAAATACCACTTGGGATCTCATTGATGACATTGAAAA GCTAAGGGAACACTTGAAAATTCCGGAATGGCAGGTTTTTGGTGGATCATGGGGAAGTACACTGGCACTTGCGTACAGCCAATCACATCCTGAAAAGGTT ACTGGACTGGTCCTTCGAGGGATTTTTCTTTTGCGAAAGAAAGAGATTGACTGGTTTTATGAAGGTGGTGCTGCTGCTATATTTCCTGATGCTTGGGAGT CATTCAGAGATTTTATTCCAGAAAATGAAAGGGGATGTTTCATAGATGCTTACAGCAAGAGATTAAACTCTGATGATTTGGAAACACAATATGCAGCTGC AAGAGCATGGACCAAATGGGAAATGATGACTGCCCATCTTCTTCCAAATGAAGAGACTGTCAAGAGAGGGGATGATGATATTTTTTCCTTGGCATTTGCA AGGATTGAAAATCATTACTTTGTGAACAAGGGGTTTTTTCCTTCAGATTCTTTCCTATTAGAAAATGTTGATAAAATAAGACACATCAACACTACAATTG TACAGGGGAGATATGATGTCTGCTGTCCTATGATGTCTGCTTGGGATCTTCATAAGGCATGGCCAGAGGCAGATCTAAAGGTTGTCCCAGACGCAGGGCA TTCTGCTAATGAACCAGGAATAACCGCAGAGCTTGTGGCTGCAAATGAGAAACTCAAAAACATCATCAAGAATGGACCGTGA
AA sequence Show only first row Show all	>Potri.001G287700.1 pacid=42791413 polypeptide=Potri.001G287700.1.p locus=Potri.001G287700 ID=Potri.001G287700.1.v4.1 annot-version=v4.1 MPTIMSLLGFTSSLVSFAPPPPLPSLTPLLPSLSCLSIRRRNPLLLSVRNLDYKCESQASGLYMEPVKESVELNRNLYANIEPYETGFLKVSDLHSIYYE QSGSPSGHPVVFLHGGPGGGTAPSNRRFFDPEFYRIILFDQRGAGKSTPHASLEENTTWDLIDDIEKLREHLKIPEWQVFGGSWGSTLALAYSQSHPEKV TGLVLRGIFLLRKKEIDWFYEGGAAAIFPDAWESFRDFIPENERGCFIDAYSKRLNSDDLETQYAAARAWTKWEMMTAHLLPNEETVKRGDDDIFSLAFA RIENHYFVNKGFFPSDSFLLENVDKIRHINTTIVQGRYDVCCPMMSAWDLHKAWPEADLKVVPDAGHSANEPGITAELVAANEKLKNIIKNGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14260		PIP	proline iminopeptidase (.1.2)		Potri.001G287700 [exp]	0	1
AT5G11900			Translation initiation factor ...		Potri.006G228100 [exp]	8.48	0.6947
AT3G29280			unknown protein		Potri.017G090400 [exp]	8.77	0.7387
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.015G003300 [exp]	11.61	0.7082
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Potri.007G137400 [exp]	20.49	0.6753
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	21.11	0.7237
AT1G08580			unknown protein		Potri.019G049300 [exp]	25.09	0.6965
AT3G07170			Sterile alpha motif (SAM) doma...		Potri.002G244700 [exp]	28.00	0.6776
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Potri.011G109500 [exp]	30.59	0.6463
AT3G61113			Ubiquitin related modifier 1 (...		Potri.014G078200 [exp]	34.39	0.6780
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	38.79	0.6952

Compare expression of checked genes

Potri.001G287700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.