Plant FIBer expression Database

Potri.001G287800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17000 333 / 5e-104 unknown protein
AT3G52110 45 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G081900
[exp]
1050 / 0 AT4G17000 314 / 3e-97 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010744
[exp]
313 / 1e-97 AT4G17000 245 / 8e-73 unknown protein
Lus10035651
[exp]
306 / 6e-95 AT4G17000 250 / 9e-75 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G287800.1 pacid=42788964 polypeptide=Potri.001G287800.1.p locus=Potri.001G287800 ID=Potri.001G287800.1.v4.1 annot-version=v4.1
ATGGAAGAAGAATCTCAGTGTTTGAAAACCAACGGCGAAGAAGACTTCTACGAGAACATCGAGGCGCCGAAGTTCGTGGACCTTAACGCTCCCGATCACT
ACCACCCGGGCGATGACCGATATTGGTTCTGCTTGCGTGTTGGATGTGAACAAAAGCATGAAGAAGAAATGGATTCTGAAGCAATCTACAAAAAATTTGT
TTTACGGGTTATGGCTGCAAGGAGTCCCAACATACGGCTTCGGAGAGCACTGTACAGAAAGGATTCAAGTGCCAATATTAAATGTCCCCAGACAGTTCCA
GCAAAATCTTCAAAACCTCGAGTATCAAGATTGGCCCTCATTTCCTCGATATCTAAAAGAATGGTTGATCCCAAAGTGAGAGTCAAATCCCTTGCTAAAC
AAAATACAACCCCAAATGTGAGGGCAAAGCAATCTGTTGTATCCAAGGCTCTGACAACTCCAAGGAACAAAAAGCGACTGTCAAATCCTGATGCATTCTG
TAGTGTTAGGAATCCGAAAGCAACAGCCGTTGCAGTGCCAAATAGTAGAGTGGTAGCGAAGGCATTATTTTCACCTAAGAAGTCAACGAGGACAAAGACT
TCAATTGAATTGGATACAACTGTCAAGAAAATATGTGCAGGTATAAAGAATCTTGAGATCGCTGATGGAAAGAAGCATGCTTTGGTGTGTAATAGACAAT
TGCCTTCAAATGCTCCAAGGAAACAACCACGAGGACGAGAGGTTAAAAGCAGAGTTTATGATGGACTACTTTCTCAAAATTGTAAGGGAAAGGAATCCAA
ATCTTTCAAATGTGTGATGAAAAAGAACAAGGGAAAGAACTCAAAGCAGTGTCATGGTCCCATGCCTCGAGAAGGGGCTGAAAATGATTTCATTGACATG
GAGATTGAGGAGAAATCAAGAAATGGTTTTCCTGGCGCCTGCTATAATGCTAAATGTGATGAAGGAAATGATGCCCTTGAAGGGCCCTTAACAACTGTAA
AAATAGAAGCATCGATGGTTGAGAACAAAGTTGAAGCCTTGTCAGATGCCAAGGCAAATACCCCGGGATGCAATGAGCCAAATCAAAGACTTTATTCCCG
GATCCACGAGAGGGGCTTGGGAGAAAATGATGTTCCCAAACTTGTAGCTTCAAGAGAAGATGGCAATGGTACCAATGAAAGAAATGGCAAAGAAGACAAA
AGGAACTCGAGTATGGATAATGGCATTGATGGTCCCATGGAGAGTAATGATAGTAAACATATTTTCATCTCAGATGAAAAGGAAAATGACAGAGAAGCCA
TTGGGAGCGACAATAAGGAAAATGCTTCAGCCTCTGATGATAACAGAGAAATGGATCTCAATACTGGTCACTTGAAAAGACAAATCCTTAGCAAGCATGA
GAGTGTGAAGAGCACTCAAAAGATAGCCAAAGCAAAGAGGAAGCCATCCAAAGAGAGCTTCGTTACTCATGCCACTGGTGCTCAAGAACTAAAACATAGA
AAACCTAAGCCTACAAATCCCAAGCCTTTTCGGCTGAGAACTGGTGAAAGAGGGATTCTTAAGGAAGCAACCTCAGAGAAGAAGCTCCACCCTGCTCCTC
TGAAAGAAATCCTACCAGTTACGAGGTTCCCAGGAGGGAATTTACAGAAAAAACATCAGAATGCATTGCCAAGAAATGACAAGAGCCTTGAACAAATCGA
ATCAGCCAATGACACTCAGGAAGCATGTGAAGTGCAAAGAAACACAACACAGAAGGAACAACATCAAAACCAGACTTCCAGCTTGAAGAACAAAGAAAGA
GCGAGACGAAAATTATCTTCAGCTCCACAGAGACACACAGTTTCGTCACAACAGAAGCTTGTGGCCCCACTGAAGAAATATAGCGAGGATAAGACAGCAG
CTCAAAATCTGGGGAACGTCTTGAAGAAGACCAGATCATCATTTGTGAGAAAAGTCGCAAGGCCTCAAGAGACCTCATCGATTACAAACGAAACACTCTC
GATTATGATACCTGGTCAACTAGGTGTGATAAAGGAAGACTCGCCAACATTCTTGAGACCCAAAGAAGCTGAAAAGCCTAGAAAAAGCAGTGCTTCCCTG
GAAATCAAAGTTTCTGCTTCTACTGTCTCCAGGCAATCACTACAGGGGAAGAGGTCAGCAACTATTCCGAAGGAACCGAATTTTCATGCCATCCACACAC
CAAAGAGCTGCACACGAAGAGTGGCTTAA
AA sequence
>Potri.001G287800.1 pacid=42788964 polypeptide=Potri.001G287800.1.p locus=Potri.001G287800 ID=Potri.001G287800.1.v4.1 annot-version=v4.1
MEEESQCLKTNGEEDFYENIEAPKFVDLNAPDHYHPGDDRYWFCLRVGCEQKHEEEMDSEAIYKKFVLRVMAARSPNIRLRRALYRKDSSANIKCPQTVP
AKSSKPRVSRLALISSISKRMVDPKVRVKSLAKQNTTPNVRAKQSVVSKALTTPRNKKRLSNPDAFCSVRNPKATAVAVPNSRVVAKALFSPKKSTRTKT
SIELDTTVKKICAGIKNLEIADGKKHALVCNRQLPSNAPRKQPRGREVKSRVYDGLLSQNCKGKESKSFKCVMKKNKGKNSKQCHGPMPREGAENDFIDM
EIEEKSRNGFPGACYNAKCDEGNDALEGPLTTVKIEASMVENKVEALSDAKANTPGCNEPNQRLYSRIHERGLGENDVPKLVASREDGNGTNERNGKEDK
RNSSMDNGIDGPMESNDSKHIFISDEKENDREAIGSDNKENASASDDNREMDLNTGHLKRQILSKHESVKSTQKIAKAKRKPSKESFVTHATGAQELKHR
KPKPTNPKPFRLRTGERGILKEATSEKKLHPAPLKEILPVTRFPGGNLQKKHQNALPRNDKSLEQIESANDTQEACEVQRNTTQKEQHQNQTSSLKNKER
ARRKLSSAPQRHTVSSQQKLVAPLKKYSEDKTAAQNLGNVLKKTRSSFVRKVARPQETSSITNETLSIMIPGQLGVIKEDSPTFLRPKEAEKPRKSSASL
EIKVSASTVSRQSLQGKRSATIPKEPNFHAIHTPKSCTRRVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17000 unknown protein Potri.001G287800
[exp]
0 1
AT5G05940 ATROPGEF5, ROPG... ROP guanine nucleotide exchang... Potri.010G196000
[exp]
5.47 0.9271
AT1G16070 TUB AtTLP8 tubby like protein 8 (.1.2) Potri.001G041400
[exp]
6.24 0.9472
AT5G48310 unknown protein Potri.014G172000
[exp]
6.48 0.9499
AT1G03780 AtTPX2, TPX2 targeting protein for XKLP2 (.... Potri.017G013100
[exp]
8.48 0.9476
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Potri.006G000400
[exp]
10.77 0.8828
AT3G25690 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLA... Potri.011G156500
[exp]
10.95 0.9112
AT5G51600 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA ... Potri.015G131400
[exp]
13.41 0.8961
AT1G76310 CYCB2;4 CYCLIN B2;4 (.1) Potri.009G165800
[exp]
13.63 0.9457
AT5G27550 P-loop containing nucleoside t... Potri.013G020700
[exp]
14.28 0.9471
AT3G23890 ATTOPII, TOPII topoisomerase II (.1.2) Potri.009G058900
[exp]
16.24 0.9454 TOP2.3

Potri.001G287800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.