Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14520 620 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 608 / 0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 424 / 4e-145 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 383 / 2e-129 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 359 / 3e-120 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 353 / 9e-118 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 343 / 6e-114 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT3G13070 66 / 2e-11 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 65 / 4e-11 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082300 [exp] 692 / 0 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 535 / 0 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 431 / 2e-147 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 420 / 1e-143 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.008G202100 [exp] 385 / 1e-130 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 379 / 6e-128 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.001G362100 [exp] 64 / 1e-10 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Potri.002G260401 [exp] 56 / 9e-10 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005259 [exp] 632 / 0 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 546 / 0 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10020494 [exp] 485 / 2e-171 AT2G14520 538 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 462 / 9e-164 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 423 / 5e-145 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 417 / 5e-143 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 417 / 1e-142 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 384 / 7e-130 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 379 / 5e-128 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 372 / 7e-125 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [poplar] [flax] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G288000.2 pacid=42788115 polypeptide=Potri.001G288000.2.p locus=Potri.001G288000 ID=Potri.001G288000.2.v4.1 annot-version=v4.1 ATGACGGTGGAGTATAGTTGCTGCGAAACGAATTTCTTTATACACATTTTGATAATAGTGTTTCTTGTTATGTTCGCTGGACTGATGTCTGGCCTCACTT TAGGGCTCATGTCTATGAGTCTCGTTGATCTTGAAGTTCTTGCTAAATCTGGTACTCCAAAAGATCGAATATACGCAGCGAAAATATTGCCGGTGGTTAA AAACCAGCATTTGTTGCTTTGCACGCTCCTTATTTGCAATGCTGCTGCTATGGAGACACTTCCCATTTTTCTTGATAGTCTGGTTACAGCTTGGGGTGCT ATTCTAATTTCAGTAACTCTGATTCTTCTATTTGGTGAGATTATACCACAATCTGTTTGTACCCGGTATGGGTTGGCAATTGGCGCAACAGTGACCCCAT TTGTCCGTGTTCTTGTTTGGATCTGTTTTCCTGTTGCCTATCCTATAAGCAAGCTTCTGGACTATATGCTGGGACATGGTCATGTTGCTCTTTTTCGCAG AGCTGAGTTGAAAACACTTGTTAATTTTCATGGTAACGAGGCTGGAAAAGGTGGAGAACTGACTCATGATGAGACGACGATTATTGCTGGAGCACTTGAG CTCACTGAGAAAACAGCTAGTGATGCCATGACTCCTATATCTGAAACTTTTGCTATTGACGTTAATGCCAAACTTGACAGGGAGTTGATGAGTTTGATAT TGGAGAAAGGGCATAGCAGGGTGCCAGTTTATTATGAGCAATCTACAAACATAATTGGACTAATTCTGGCCAAGAATTTGTTGACAATTCACCCAGAAGA TAAAGTACCTGTAAAGAATGTCACTATACGCAGGATCCCCAGGGTTCTAGAAACTCTACCTTTATATGATATATTGAACGAGTTTCAAAAAGGTCATAGC CACATGGCAGTTGTTGTAAGGCAGTGCAAAAAGCCAGAGGAGCAGCATGTTAGCAGTGCTAGTGACAATCCGGTGAAAGAAGTTAAAGTTGATATCGATG GTGAAAAGCCTCCCAAAGACAAGACTTTGAAGAGCATGAGAGCACTTCAAAAGTGGAAAAGCTTTCCCAACAGCGGCAACAATTCATTTAGGAGCTCAAG GAGCAAGAAGTGGACAAAGGACTTGGATTCAGACATCTTGCATCTAAATGGCAATCCACTACCAAAGCTCCCAGAGGAAGAAGAAGCAGTAGGCATAATA ACAATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTCGATGAAACAGATCATCATTTTGAGGATTCTTGCAATGGCCTTGCTAAGCCGTAG
AA sequence Show only first row Show all	>Potri.001G288000.2 pacid=42788115 polypeptide=Potri.001G288000.2.p locus=Potri.001G288000 ID=Potri.001G288000.2.v4.1 annot-version=v4.1 MTVEYSCCETNFFIHILIIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIYAAKILPVVKNQHLLLCTLLICNAAAMETLPIFLDSLVTAWGA ILISVTLILLFGEIIPQSVCTRYGLAIGATVTPFVRVLVWICFPVAYPISKLLDYMLGHGHVALFRRAELKTLVNFHGNEAGKGGELTHDETTIIAGALE LTEKTASDAMTPISETFAIDVNAKLDRELMSLILEKGHSRVPVYYEQSTNIIGLILAKNLLTIHPEDKVPVKNVTIRRIPRVLETLPLYDILNEFQKGHS HMAVVVRQCKKPEEQHVSSASDNPVKEVKVDIDGEKPPKDKTLKSMRALQKWKSFPNSGNNSFRSSRSKKWTKDLDSDILHLNGNPLPKLPEEEEAVGII TMEDVIEELLQEEIFDETDHHFEDSCNGLAKP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14520			CBS domain-containing protein ...		Potri.001G288000 [exp]	0	1
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	2.44	0.8126
					Potri.018G034950 [exp]	3.74	0.6405
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	10.39	0.6642
AT5G15120			Protein of unknown function (D...		Potri.013G064200 [exp]	12.96	0.6849
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.001G199000 [exp]	15.29	0.6409
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	20.83	0.6639
AT3G27220			Galactose oxidase/kelch repeat...		Potri.001G334800 [exp]	28.42	0.6606
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.004G086900 [exp]	28.46	0.6256
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Potri.001G379800 [exp]	41.13	0.6009
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	50.47	0.6169

Compare expression of checked genes

Potri.001G288000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.