Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 343 / 6e-120 unknown protein AT5G65810 341 / 4e-119 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082400 [exp] 434 / 4e-156 AT3G49720 393 / 7e-140 unknown protein Potri.002G114000 [exp] 317 / 1e-109 AT5G65810 364 / 2e-128 cotton Golgi-related 3, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019279 [exp] 352 / 1e-123 AT3G49720 421 / 7e-151 unknown protein Lus10011564 [exp] 352 / 1e-123 AT3G49720 422 / 4e-151 unknown protein Lus10039648 [exp] 340 / 7e-119 AT3G49720 405 / 2e-144 unknown protein Lus10007228 [exp] 335 / 6e-117 AT3G49720 401 / 6e-143 unknown protein Lus10032796 [exp] 308 / 3e-106 AT3G49720 337 / 7e-118 unknown protein Lus10012481 [exp] 305 / 5e-105 AT3G49720 332 / 1e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G288200.1 pacid=42792538 polypeptide=Potri.001G288200.1.p locus=Potri.001G288200 ID=Potri.001G288200.1.v4.1 annot-version=v4.1 ATGTCAAGGAGGCCAGGGAATCCTGCTAGACGTTTTGCTGATGGGGGAAGTCTTCCTTTTGTTGGTTCAATGCATTCTAAATCACGTTCATCGCCGCTAC TATCCATTGGCCTTCTTGTTGTGGGCGCAATCCTTCTCATTGGATATCTTTACAGTGGTTCAGGTGGGCGTACCAGCGATAGAGAAGCTTTAGGCAATGC AGAAGGTGGTGTTTCATGCACATCAGAAGTCCAAAGAGCGATACCTATTCTGAAGAAGGCTTATGGTGACAGCATGCGTAAAGTGTTGCATGTTGGCCCT GACACTTGCTTAGCAGTATCAAGCTTATTAAAAGAAGAGGATACCGAGGCCTGGGGTGTGGAACCATATGACTTAGATGATGTGAGTGCCAACTGCAAGA GTCTTGTGCGCAAAGGCCTTGTTCGTGTGGCTGACATCAAATTTCCTTTGCCCTACCGGGCAAAATCATTCTCTCTTGTTGTAGTGTCGGACGCTTTGGA TTATTTGTCTCCAAAATATCTCAACAAAACTCTTCCAGAATTGGCGAGAGTGTCAGCTGATGGCTTAGTTATATTTTCTGGCCATCCAGGTCAGCAAAGA GTTAAAGTTGCAGAAATGTCCAAGTTTGGTCGTCCAGCCAAATTTCGGAGCTCATCCTGGTGGATAAGGTACTTTGTTCAGATTGGTTTACAAGTGAATG AACCCGCCATAAAGAAGTTTGAGCAGGCTTCGTTGAAGAAGTCATATAAGCCAGCCTGCCAAGTTTTCCACCTCCAGTCACACGATTGA
AA sequence Show only first row Show all	>Potri.001G288200.1 pacid=42792538 polypeptide=Potri.001G288200.1.p locus=Potri.001G288200 ID=Potri.001G288200.1.v4.1 annot-version=v4.1 MSRRPGNPARRFADGGSLPFVGSMHSKSRSSPLLSIGLLVVGAILLIGYLYSGSGGRTSDREALGNAEGGVSCTSEVQRAIPILKKAYGDSMRKVLHVGP DTCLAVSSLLKEEDTEAWGVEPYDLDDVSANCKSLVRKGLVRVADIKFPLPYRAKSFSLVVVSDALDYLSPKYLNKTLPELARVSADGLVIFSGHPGQQR VKVAEMSKFGRPAKFRSSSWWIRYFVQIGLQVNEPAIKKFEQASLKKSYKPACQVFHLQSHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49720			unknown protein		Potri.001G288200 [exp]	0	1
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	2.44	0.9247
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.003G072500 [exp]	6.48	0.9190	PAE1.2
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	7.07	0.9313
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Potri.001G271100 [exp]	8.94	0.9220
AT4G27720			Major facilitator superfamily ...		Potri.015G008100 [exp]	10.81	0.9128
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	11.13	0.9257
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.006G095000 [exp]	12.16	0.8826	TUB5
AT3G20560		ATPDI12, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.001G419300 [exp]	17.34	0.8922
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.002G099800 [exp]	17.74	0.9092	Pt-CHI.3
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.014G066800 [exp]	17.88	0.9091	GOS12.1

Compare expression of checked genes

Potri.001G288200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.