Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10020 366 / 4e-123 Protein of unknown function (DUF1005) (.1) AT3G19680 350 / 1e-116 Protein of unknown function (DUF1005) (.1) AT1G50040 336 / 2e-111 Protein of unknown function (DUF1005) (.1) AT4G29310 317 / 2e-104 Protein of unknown function (DUF1005) (.1) AT5G17640 217 / 1e-65 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084000 [exp] 691 / 0 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.002G112600 [exp] 402 / 2e-137 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.005G150100 [exp] 379 / 3e-128 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 223 / 3e-68 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012451 [exp] 411 / 1e-140 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10020509 [exp] 402 / 3e-136 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1) Lus10032807 [exp] 348 / 3e-116 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10034991 [exp] 310 / 1e-101 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012933 [exp] 241 / 3e-76 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [poplar] [flax] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Potri.001G288900.1 pacid=42792674 polypeptide=Potri.001G288900.1.p locus=Potri.001G288900 ID=Potri.001G288900.1.v4.1 annot-version=v4.1 ATGGATCCGTGCCCTTTTGTACGGATCCTTGTTGGTAACTTAGCACTCAAGTTTCCCGTCTCTTCGAAACCTTCCTTGTTAAGTGTACAATGTTTTTGCA AGATCAAGCTCAAGAATTTCCCTACTCAAAAAGCTACAATCCCTTTAGTGAACAATAAAAAACAACAAGAAAATCAAAAACCAGAAGGCAATCCTTTATC GAGTTCTTTAGCTGCGTGTTATAGTCTTGACAAGACTCAGATTGATGATCTTTTGTCTTGCAAGAAACCCAAGAATTTGGAGATTGAGGTGTACATTAGA GACAACGGGGTTACTTGTGGATTGAAAGATGGGAAAATGTTGGGGAGAGTGACTGTGCCTTTAGAGATGAGAAAGTCAGAGTCTAGGCCTTGTGTTATGC ATAATGAATGGATTGATATTGGAGAAAACAAGAAAGGAGAACCTACACAGTTTTATTTTTGTGTTAGAGTTGAGCCCGATCCTAGATATGCATTCCAGTT TGGTGGAGATCCTGAGTGTAGTCCTCAGGTTTTTCAGGTGCAAGGGAGTGTTAGGCAGGCGGTTTTCACTTGCAAGTTCAGCTTGAGGAATCCAGGAGAT CGTAATTTGGTTTCTATGCCATCAATGACAGAACCAGCCCCATCAAGAAATTGGCTGCCCTCCCTTGAAGCTGATAAAGACCCATCAGCAAAAGAGCGAA AAGGATGGTCAATCACGATCCATGACCTATCTGGATCGCCTGTTGCTATGGCATCAATGGTGACACCATTTGTACCATCCCCGGGTTCGAACCATGTTAG TCGGTCCAATCCCGGGGCGTGGCTAATTCTTCACCCAGCACAAGGAACTTGGAAACCATGGGGCCGCCTGGAGGCATGGCGTGAACGTAATGCCAATGCT TTAGGATACCATTTTGAATTGCTACATGACTCTGTTTCGGCCTCCCCTACCACCACCCCACTAGTCAATTGTGTTATCAATGCTAAAAATGGAGGGAAGT TTACAATTGACACGACAAATAGTGTTAGCACCCCAGTAAGCAGTCCACATTCTAGTTGTGATTTCGGGTCTGGACCGGGTTCTGGATCGTGGTCTGGATC GGAGTTTGGGTTGTTTTCCCCGTTTGTGTACAAAGGTTTTGTAATGCAATCAAGTGTCAACAATGGTAATGACCAAAGTAGTAAGCCAGAGGTGGAGATA GGGGTGCAACACGTGAATTGCACAGAGGATGCGGCGGCCTTTGTGGCATTAGCAGCAGCTGTGGATCTAAGCGTGGATGCTTGTAAATCCTTTACTCGTA AGCTAAGGAAAGAGTTGAGACAGAGTCAGAGTTTTGACGTTTGA
AA sequence Show only first row Show all	>Potri.001G288900.1 pacid=42792674 polypeptide=Potri.001G288900.1.p locus=Potri.001G288900 ID=Potri.001G288900.1.v4.1 annot-version=v4.1 MDPCPFVRILVGNLALKFPVSSKPSLLSVQCFCKIKLKNFPTQKATIPLVNNKKQQENQKPEGNPLSSSLAACYSLDKTQIDDLLSCKKPKNLEIEVYIR DNGVTCGLKDGKMLGRVTVPLEMRKSESRPCVMHNEWIDIGENKKGEPTQFYFCVRVEPDPRYAFQFGGDPECSPQVFQVQGSVRQAVFTCKFSLRNPGD RNLVSMPSMTEPAPSRNWLPSLEADKDPSAKERKGWSITIHDLSGSPVAMASMVTPFVPSPGSNHVSRSNPGAWLILHPAQGTWKPWGRLEAWRERNANA LGYHFELLHDSVSASPTTTPLVNCVINAKNGGKFTIDTTNSVSTPVSSPHSSCDFGSGPGSGSWSGSEFGLFSPFVYKGFVMQSSVNNGNDQSSKPEVEI GVQHVNCTEDAAAFVALAAAVDLSVDACKSFTRKLRKELRQSQSFDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	0	1
AT1G10020			Protein of unknown function (D...		Potri.009G084000 [exp]	1.00	0.8824
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.010G213200 [exp]	1.41	0.8580
AT3G51710			D-mannose binding lectin prote...		Potri.016G132500 [exp]	1.73	0.7901
					Potri.001G053450 [exp]	2.00	0.7738
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	7.00	0.7254
AT3G54000			unknown protein		Potri.016G105000 [exp]	8.48	0.6978
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	9.21	0.7405
					Potri.006G183466 [exp]	10.09	0.7405
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	14.69	0.6372	PtrGrx20
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	15.90	0.6705

Compare expression of checked genes

Potri.001G288900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.