Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33760 998 / 0 tRNA synthetase class II (D, K and N) family protein (.1) AT3G13490 70 / 2e-12 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G11710 65 / 1e-10 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT4G26870 63 / 4e-10 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 59 / 5e-09 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G17300 47 / 3e-05 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 43 / 0.0008 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084300 [exp] 1204 / 0 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.003G221600 [exp] 80 / 2e-15 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.018G090400 [exp] 69 / 6e-12 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090600 [exp] 69 / 6e-12 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G166000 [exp] 69 / 7e-12 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G085400 [exp] 66 / 4e-11 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.017G028800 [exp] 44 / 0.0005 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.007G129800 [exp] 43 / 0.0007 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037243 [exp] 1049 / 0 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10035657 [exp] 717 / 0 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10013408 [exp] 72 / 1e-12 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10001625 [exp] 69 / 7e-12 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10001440 [exp] 69 / 8e-12 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10010317 [exp] 67 / 4e-11 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10028555 [exp] 64 / 2e-10 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10018862 [exp] 57 / 3e-08 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 47 / 5e-06 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain CL0250 [poplar] [flax] GAD PF02938 [poplar] [flax] GAD GAD domain
Representative CDS sequence Show only first row Show all	>Potri.001G289001.1 pacid=42791585 polypeptide=Potri.001G289001.1.p locus=Potri.001G289001 ID=Potri.001G289001.1.v4.1 annot-version=v4.1 ATGACTCTTCTTCTCCGATCCTTCCCTCTAATCACTCTCCGCACCACCAGACCCTGCTCTCTTCCTCTCCTCCAAACTCTTCTCAAATATCACTTTCCCA AATCACTTTCAACAAAACACACAAGAACCCTTGTAGCTCTTTCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCCCCTGAAACCATTCTCAAGCCACAACA ACAACCAAAAGATACCCTCCTCTGGGTCTCTCGTACCAACTTCTGCGGCCAATTATCCATCAATGATGTCGGTGCACGTGTTCGTCTCTGTGGGTGGGTT GCTCTTCACAGAGTCCATGGTGGTCTCACCTTTTTCAATCTCAGAGACCACACTGGCATTGTCCAGGTTGCGACTTTGCCTGATGAATTTCCTGATGCGC ATTCTATTATAAATGATTTAAGAGTTGAGTATGTGGTTGTTGTCGAAGGGGTTGTTCGGTCTCGGCCTGTTGAGTCTGTTAATAAGAAAATGGCCACCGG TTCTATTGAGGTAGTTGCGGAGCATGCTCAATTGTTGAATGCAGTGAAAGCAAAGTTGCCGTTTTTAGTTACTACAGTAGACGATGCTAAGGATTCTGTT AAGGAGGAGATTCGTTTGAGATATCGATGCCTTGACTTACGGCGGCAGCAAATGAGCTCTAACATTATGCTGAGGCACAGGGTGGTGAAACTCATTAGAA GATATCTTGAGGATGTTCAGGGTTTTGTGGAGATTGAGACCCCCATACTTTCTAGATCTACTCCAGAAGGTGCCCGGGATTATTTAGTGCCTTCAAGAAT TCAGCCAGGAACCTTCTATGCTTTACCCCAGAGTCCACAACTCTTTAAGCAAATGTTAATGGTCTCTGGTTTTGACAAATATTATCAAATAGCAAGATGC TTTAGAGATGAAGATCTAAGGGCGGATAGACAACCCGAGTTCACCCAGTTAGATATGGAATTGGCATTCACTCCCATGGAGGATATGCTGAGACTCAATG AAGATCTAATTCGAAAGGTATTTTTGGAGATTAAAGGTGTCCAGCTACCAAACCCATTCCCTAGGCTTACATATGCTGAAGCAATGAGCAGATATGGTTC AGACAGGCCAGACACAAGATTTGATCTTCATTTGAAAGACGTATCTGATATTTTTTCAGAGTCCTCTTTCAGGGTTTTTGCTGATAGCTTGAAAAGTGGG GGTATTATTAAAGTACTCTGTGTGCCTTCAGGTGCTAAAAGTTATTCAAACACTGCTCTTAAAAAAGGTGACATTTACAACGAAGCAATCAAATCAGGAG CAAAGGGTTTGGCCTTTCTGAAGGTCTTGGATAATGGGGAGTTTGAGGGAATTTCTGCATTACTTTCAAGTTTGGATTCAACAAATAAAGAGCAGTTGCT AAGTCGCTGCTCTGCAGGACCAGGGGACCTTATCTTGTTTGCAGTTGGTCATCATTCATCAGTTAATAAAACTCTTGATCGACTTAGGCTATTCATAGCC AATCAGCTGGGCTTGAATGATCCTTCCAGGTATTCAATTTTGTGGGTGACTGATTTTCCAATGTTTGAGTGGAACGAAACAGAGCAGAGGCTTGAGGCCT TGCATCACCCATTTACTGCTCCCAATCCTGAAGACATGAAAGACCTTTCCTCTGCACGTGCCCTTGCTTATGACATGGTTTATAATGGGGTTGAGATTGG TGGAGGAAGTTTGAGAATTTATAAACGTGAGATCCAGCAAAAAGTTTTGGAAATTGTTGGCATCACCCCCGAACAGGCTGAAGCGAAGTTCGGCTATCTT CTGGAGGCGTTGGACATGGGCGCTCCTCCACATGGGGGGATTGCTTATGGGCTGGATAGATTGGCTATGTTGTTGGCTGGTGCTAATTCCATCAGGGATG TCATAGCTTTCCCAAAGACAACAACTGCTCAGTGTGCCCTTACTAGGGCACCATCAGAGGTGGATCCTCAACAGCTTAAAGATTTATCTTTCCGTACCCA ATAG
AA sequence Show only first row Show all	>Potri.001G289001.1 pacid=42791585 polypeptide=Potri.001G289001.1.p locus=Potri.001G289001 ID=Potri.001G289001.1.v4.1 annot-version=v4.1 MTLLLRSFPLITLRTTRPCSLPLLQTLLKYHFPKSLSTKHTRTLVALSAASSSSSSSSPETILKPQQQPKDTLLWVSRTNFCGQLSINDVGARVRLCGWV ALHRVHGGLTFFNLRDHTGIVQVATLPDEFPDAHSIINDLRVEYVVVVEGVVRSRPVESVNKKMATGSIEVVAEHAQLLNAVKAKLPFLVTTVDDAKDSV KEEIRLRYRCLDLRRQQMSSNIMLRHRVVKLIRRYLEDVQGFVEIETPILSRSTPEGARDYLVPSRIQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARC FRDEDLRADRQPEFTQLDMELAFTPMEDMLRLNEDLIRKVFLEIKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLHLKDVSDIFSESSFRVFADSLKSG GIIKVLCVPSGAKSYSNTALKKGDIYNEAIKSGAKGLAFLKVLDNGEFEGISALLSSLDSTNKEQLLSRCSAGPGDLILFAVGHHSSVNKTLDRLRLFIA NQLGLNDPSRYSILWVTDFPMFEWNETEQRLEALHHPFTAPNPEDMKDLSSARALAYDMVYNGVEIGGGSLRIYKREIQQKVLEIVGITPEQAEAKFGYL LEALDMGAPPHGGIAYGLDRLAMLLAGANSIRDVIAFPKTTTAQCALTRAPSEVDPQQLKDLSFRTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33760			tRNA synthetase class II (D, K...		Potri.001G289001 [exp]	0	1
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	9.74	0.9099
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	10.67	0.9095
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	11.40	0.9214
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	15.74	0.9105
AT4G23940			FtsH extracellular protease fa...		Potri.001G089800 [exp]	16.49	0.9056
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	16.73	0.8981
AT5G48830			unknown protein		Potri.002G241200 [exp]	22.13	0.9081
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	24.33	0.8954
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	24.49	0.9038
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	24.67	0.9134

Compare expression of checked genes

Potri.001G289001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.