Plant FIBer expression Database

Potri.001G289250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73930 54 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G049900
[exp]
65 / 3e-14 AT1G73930 865 / 0.0 unknown protein
Potri.012G060200
[exp]
54 / 2e-10 AT1G73930 847 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042970
[exp]
54 / 2e-10 AT1G73930 955 / 0.0 unknown protein
Lus10032474
[exp]
54 / 3e-10 AT1G73930 957 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G289250.1 pacid=42791306 polypeptide=Potri.001G289250.1.p locus=Potri.001G289250 ID=Potri.001G289250.1.v4.1 annot-version=v4.1
ATGGGTCCTTTATATTTTGATATAGGAAAGAATTTTATTGAGAGATTGCTCCCTATTGCTGCTTATATTTTTATGTGGCCTGCTCTTGTACCTGGTAGAC
ATATGGAGCTTCCTATTGGAAATGTCTTGCTTAAAAGGAGTCTGCTGCTGGATTTGAAAAGGTTTCATTGA
AA sequence
>Potri.001G289250.1 pacid=42791306 polypeptide=Potri.001G289250.1.p locus=Potri.001G289250 ID=Potri.001G289250.1.v4.1 annot-version=v4.1
MGPLYFDIGKNFIERLLPIAAYIFMWPALVPGRHMELPIGNVLLKRSLLLDLKRFH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73930 unknown protein Potri.001G289250
[exp]
0 1
Potri.006G254450
[exp]
1.00 1.0000
AT5G45160 Root hair defective 3 GTP-bind... Potri.012G117034
[exp]
3.87 1.0000
AT5G57810 TET15 tetraspanin15 (.1) Potri.018G100000
[exp]
4.24 1.0000
AT5G03610 GDSL-like Lipase/Acylhydrolase... Potri.005G053100
[exp]
10.58 0.6028
AT1G43760 DNAse I-like superfamily prote... Potri.012G063901
[exp]
11.48 0.7323
AT2G07020 Protein kinase protein with ad... Potri.018G147032
[exp]
14.96 0.4907
AT2G37770 ChlAKR, AKR4C9 Chloroplastic aldo-keto reduct... Potri.006G090501
[exp]
20.49 0.5493
Potri.003G198150
[exp]
22.27 0.5038
Potri.019G082300
[exp]
26.26 0.6004
AT2G14760 bHLH bHLH084 basic helix-loop-helix (bHLH) ... Potri.009G089000
[exp]
99.97 0.4492

Potri.001G289250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.