Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 623 / 0 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G52920 325 / 8e-104 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 323 / 3e-103 PKP3 plastidial pyruvate kinase 3 (.1) AT3G25960 223 / 8e-66 Pyruvate kinase family protein (.1) AT5G63680 214 / 1e-62 Pyruvate kinase family protein (.1) AT3G55650 213 / 3e-62 Pyruvate kinase family protein (.1) AT5G08570 212 / 1e-61 Pyruvate kinase family protein (.1) AT3G04050 208 / 3e-60 Pyruvate kinase family protein (.1) AT4G26390 198 / 1e-56 Pyruvate kinase family protein (.1) AT5G56350 192 / 2e-54 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084700 [exp] 1031 / 0 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 633 / 0 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 632 / 0 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.012G034000 [exp] 327 / 1e-104 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.001G145300 [exp] 326 / 1e-104 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 317 / 5e-101 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.010G254900 [exp] 213 / 6e-62 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 208 / 5e-60 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 206 / 2e-59 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012446 [exp] 825 / 0 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 810 / 0 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012445 [exp] 633 / 0 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10039396 [exp] 619 / 0 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 617 / 0 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033757 [exp] 566 / 0 AT3G22960 429 / 5e-145 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10000672 [exp] 334 / 2e-107 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 333 / 2e-106 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 301 / 3e-95 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10003439 [exp] 220 / 1e-64 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain CL0151 [poplar] [flax] PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.001G289300.1 pacid=42788217 polypeptide=Potri.001G289300.1.p locus=Potri.001G289300 ID=Potri.001G289300.1.v4.1 annot-version=v4.1 ATGGCAGTTTCTAGTGATTCAATGCTTCAAAAGGTCTTTGCAAAGAGCCCAACTTTTGATTCGAACAAAAAGGTTCTAGGAAAATCAGTGGGTATATCTG GTGGGGTAATTTCTTGCAATGAAAGGAAGCTGAAAAGTGAAGACAAGATCGCAGTAAAAGCATCGGCAGAAGCTGGTTTAAAGGGTTTGAAGAGTTATGA GGTGAACTTGGATCTGGGGTTTGATGTGGTGGCAGAGAGAGAGTTGAGAGAAAAAGGGTTCTTGGGGGTAAGGAAGACAAAGTTAGTGTGTACCATAGGC CCTGCTTGTTGTTCTTTGGAGGATTTGGAGAGATTGGCAATGGGAGGGATGAATGTGGCTAGGCTTAATATGTGCCATAACACAAGAGAGTGGCACCGTG ATGTTATTAGGAAAATCAAGAAGTTGAATGAGGAGAAAGGTTTTTTTGTTTCGGTTATGATTGATACTGAAGGCAGCCTGATTCATGTAGTGGATCATGG AGCTCCTTCCTCTATCAAAGCAGAGGAAGGTTCAGTGTGGGTATTTACAGCTACAAAATTCGAGGGTTCTCGTCCATTCACTGTGCAAGCCAACTACGAA GGCTTCTCTGAAGGCATCATGGTGGGTGATGAACTGGTTATTGATGGTGGAATGGCGAAGTTTGAAGTCGTTGAAAGGATGGGGAATGATTTGCGTTGCA AGTGCACGGATCCTGGTCTATTCCTTCCTCGAGCCAAGTTAAGCTTCTGGAGGGATGGGAAGCTTTCCTATCACGGTCTTCCAACTCTATCAATAAAGGA TTGGGCAGATGTTGATTTCGGAGTTTCTGAAGGTGTTGATTTTATTGCCTTGTCCTTTGTAAATGATGCCAATTCTGTCAAGAATCTGAAGAATTATCTC TCCGCCAAATCGTCCAAATCAATAAGAGTACTGGCAAAGATTGAGACCTTGGAGTCTCTTCAGAAATTGGAAGAAATTGTAGAGGCATCTGATGGAATCA TGGTGGCTCGTGGTGACCTAGGAGTTGAAGTTCCACTTGAACTGATTCCAACAGTCCAAGAGGATGTAACTCGTTTATGTAGGCAGCTGAACAAGCCAGT AATTATTGCTTCTCAACTTCTTGAATCAATGGTCGAATGCCCAACTCCAACACGTGCTGAGGTGGCAGATGTGTCTGAAGCAGTTCGACAGTATGCAGAT GCACTGATGCTGTCTGGTGAATCAGCAATTGGATTACATGGGCAGAAGGCTCTATCTGTCTTGCAGATGGTCAGCAGTCGAATGGAACTATGGAGTCATG AGGAAAACCGACAGAGTGCTCTTCATAACAGTCAGCTGGGCGATATGTTGTCTGATTGCATTGCTGAAGAAATATGCAATTGTGCTGTTCAAATGGCTAA CAACCTTGGTGTAGACGCTATCTTTGTGTACACAAAGCATGGTGAAATGGCATCACTTTTATCTCGCAACCGGCCCTACCCTCCCATATTTGCGTTTACC AGTGACAATAATGCTCGGATGGCTTTGAATTTGCAGTGGGGAGTTATCCCACTTCTTGTTGATTTATCAGATGATATGGAAGCCAACATCTCAAAAACCA TTGATCTGATAAGAACAAAGGGGATGATAAAAGAGGGAGATGCTGTTCTGCTGGTCTCAGATTTAACTCCGACACATGCAACTTCAACGACTTTCCAATC AATCCAGGTGAAGACCATTGTTTAG
AA sequence Show only first row Show all	>Potri.001G289300.1 pacid=42788217 polypeptide=Potri.001G289300.1.p locus=Potri.001G289300 ID=Potri.001G289300.1.v4.1 annot-version=v4.1 MAVSSDSMLQKVFAKSPTFDSNKKVLGKSVGISGGVISCNERKLKSEDKIAVKASAEAGLKGLKSYEVNLDLGFDVVAERELREKGFLGVRKTKLVCTIG PACCSLEDLERLAMGGMNVARLNMCHNTREWHRDVIRKIKKLNEEKGFFVSVMIDTEGSLIHVVDHGAPSSIKAEEGSVWVFTATKFEGSRPFTVQANYE GFSEGIMVGDELVIDGGMAKFEVVERMGNDLRCKCTDPGLFLPRAKLSFWRDGKLSYHGLPTLSIKDWADVDFGVSEGVDFIALSFVNDANSVKNLKNYL SAKSSKSIRVLAKIETLESLQKLEEIVEASDGIMVARGDLGVEVPLELIPTVQEDVTRLCRQLNKPVIIASQLLESMVECPTPTRAEVADVSEAVRQYAD ALMLSGESAIGLHGQKALSVLQMVSSRMELWSHEENRQSALHNSQLGDMLSDCIAEEICNCAVQMANNLGVDAIFVYTKHGEMASLLSRNRPYPPIFAFT SDNNARMALNLQWGVIPLLVDLSDDMEANISKTIDLIRTKGMIKEGDAVLLVSDLTPTHATSTTFQSIQVKTIV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.001G289300 [exp]	0	1
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	8.24	0.7760
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.013G019800 [exp]	11.74	0.7302
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	13.34	0.8093
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	14.00	0.7936	Pt-TMKL1.1
AT2G05920			Subtilase family protein (.1)		Potri.006G141200 [exp]	15.49	0.7608
AT3G27650	AS2	LBD25	LOB domain-containing protein ...		Potri.001G345700 [exp]	16.97	0.6920
AT4G21890			unknown protein		Potri.011G001800 [exp]	18.43	0.7374
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	29.73	0.7487
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.001G217700 [exp]	36.33	0.7531
AT3G06130			Heavy metal transport/detoxifi...		Potri.008G202800 [exp]	36.61	0.7548

Compare expression of checked genes

Potri.001G289300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.