Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17870 756 / 0 ATEGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1) AT5G35220 116 / 2e-27 EGY1 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) AT5G05740 84 / 8e-17 ATEGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) AT5G35210 59 / 1e-08 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G064700 [exp] 113 / 4e-26 AT5G35220 766 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Potri.008G066500 [exp] 95 / 3e-20 AT5G05740 610 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006140 [exp] 787 / 0 AT1G17870 801 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1) Lus10005688 [exp] 114 / 2e-26 AT5G35220 776 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Lus10020304 [exp] 110 / 4e-25 AT5G35220 781 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Lus10011873 [exp] 92 / 2e-19 AT5G05740 648 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10022806 [exp] 86 / 3e-17 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G289700.1 pacid=42787827 polypeptide=Potri.001G289700.1.p locus=Potri.001G289700 ID=Potri.001G289700.1.v4.1 annot-version=v4.1 ATGGCAACTCTCTCAACCTCTTCACATTTTTCTCTATCTCCATGCACTATCAAAACTAAGAACATTAAAAGCAACCCATGCAGCGGCATCTCATGTTCTT TAACCACGAACCGCCTTGCCCAAAACACGCACCTTTGCTTTTATCCATGCTCTAAAAACAAACCAGGAGAGCCCCTTAAATTTACCATCAGAAATGAGCA AGAAACTGAAGCCAAAAGGCATTCATTTCGTAAAAGACACTCATTTGGACGAAGAACCAGCCTCTCATTCTCTCTTGTTACAAAAGAAAATCATTTGAAG CCTGTTATGTCCTCTGCCAAAGATGAGGGAGAAAGTGAGCAGACTTCTTCATCTTCAGTCGCAGTGATTACTGACAAGACCGAAAGTGAAACAAAAGAGA GTCCAGAAGTGGAATTGAGCAAAGAAAGTGATCGATTGGATAAGGATAAAGAGAAACAACAAGAGATGGACTGGAAGACTGATGAAGAGTTCAAGAAGTT CATGGGGAATCCTTCCATAGAGGCAGCAATAAAGCTGGAGAAGAAAAGGGCTGATAGAAAGCTTAAGGAACTTGATAGGGAAAGCAGTGATAATCCAATT GTGGGGTTGTTTAATAGATTGGTTCGTGACAGTTTGACTAGGGAAAAAGAGAGGTTGGAGAAGGCTGAGGAGGCTTTTAGGGCTCTTGATCTTAATAAGT TAAAGAGCTGTTTCGGGTTTGACACCTTTTTTGCTACTGATGCTCGAAGATTTGGTGATGGGGGGATTTTTATTGGGAATTTGAGGAAACCCATTGAAGA GGTCATTCCTAAACTGGAGAAAAAGCTATCTGAAGCAGCAGGGCGGGAGGTAGTTGTGTGGTTCATGGAGGAAAAGAACGATGACATAACAAAACAGGCT TGTGTGGTGCAACCCAAGTCAGAGATGGATCTCCAGTTCGAATCAATTAAGCTGAGCACACCTTGGGGCTATATCAGTGCTATAGTCTTATGTGTGGCCA CTTTTGGGACGATAGCTTTGATGAGTGGCTTCTTCCTGAAGCCAAATGCAACTTTTGATGACTATATTGCTGATGTTGCTCCTCTTTTTGGTGGCTTCCT CACTATTTTGGGAGTTTCTGAGATAGCCACAAGAGTAACAGCAGCTCATTATGATGTCAAACTCAGCCCATCATTTCTTGTTCCATCCAATTGGACTGGA TGCTTGGGAGTGATGAACAATTATGAATCCCTGCTTCCAAATAGGAAGGCCCTTTTTGATATTCCAGTGGCAAGAACAGCAAGTGCATATTTGACATCTC TAGTGCTGGCGATTACTGCTTTCGTGACTGATGGTAGCTTCAATGGCGGTGACAATGCACTGTATATAAGGCCACAATTCTTCTACAACAACCCTTTGCT TTCTTTCATCCAGTTTGTCATCGGACCTTATACAGATGACCTTGGGAACGTATTGCCTTATGCAGTGGAGGGTGTGGGGGTTCCTGTTGATCCCCTTGCT TTTGCTGGACTTTTAGGAATGGTGGTGACTTCTTTGAACTTGTTGCCCTGTGGAAGACTTGAAGGAGGCCGCATAGCTCAAGCTATGTATGGGAGAAATA CAGCAACTTTGCTGTCTTTTGCAACATCCCTTTTACTTGGTATTGGTGGTCTAAGTGGCAGTGTCCTTTGTTTGGCTTGGGGATTGTTCGCAACATTTTT CCGGGGTGGAGAAGAAATACCTGCTAAAGATGAGATCACCCCTTTGGGAGATGACAGGCTTGCTTGGGGCGTTGTTCTCGGTCTTATCTGTTTCCTCACA CTTTTCCCCAATGGCGGAGGAACATTCTCCAGTCCATTCCTCAGTGACCCTTTTTTCAGGGGTGATATGTGA
AA sequence Show only first row Show all	>Potri.001G289700.1 pacid=42787827 polypeptide=Potri.001G289700.1.p locus=Potri.001G289700 ID=Potri.001G289700.1.v4.1 annot-version=v4.1 MATLSTSSHFSLSPCTIKTKNIKSNPCSGISCSLTTNRLAQNTHLCFYPCSKNKPGEPLKFTIRNEQETEAKRHSFRKRHSFGRRTSLSFSLVTKENHLK PVMSSAKDEGESEQTSSSSVAVITDKTESETKESPEVELSKESDRLDKDKEKQQEMDWKTDEEFKKFMGNPSIEAAIKLEKKRADRKLKELDRESSDNPI VGLFNRLVRDSLTREKERLEKAEEAFRALDLNKLKSCFGFDTFFATDARRFGDGGIFIGNLRKPIEEVIPKLEKKLSEAAGREVVVWFMEEKNDDITKQA CVVQPKSEMDLQFESIKLSTPWGYISAIVLCVATFGTIALMSGFFLKPNATFDDYIADVAPLFGGFLTILGVSEIATRVTAAHYDVKLSPSFLVPSNWTG CLGVMNNYESLLPNRKALFDIPVARTASAYLTSLVLAITAFVTDGSFNGGDNALYIRPQFFYNNPLLSFIQFVIGPYTDDLGNVLPYAVEGVGVPVDPLA FAGLLGMVVTSLNLLPCGRLEGGRIAQAMYGRNTATLLSFATSLLLGIGGLSGSVLCLAWGLFATFFRGGEEIPAKDEITPLGDDRLAWGVVLGLICFLT LFPNGGGTFSSPFLSDPFFRGDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Potri.001G289700 [exp]	0	1
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.008G058800 [exp]	4.89	0.9407
AT3G60210			GroES-like family protein (.1)		Potri.014G044300 [exp]	6.48	0.8988	CPN10.4
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.004G237000 [exp]	13.85	0.9266
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Potri.015G087000 [exp]	17.32	0.8833
AT1G14730			Cytochrome b561/ferric reducta...		Potri.008G138300 [exp]	18.43	0.8764
AT4G01650			Polyketide cyclase / dehydrase...		Potri.014G110600 [exp]	18.97	0.9186
AT1G16080			unknown protein		Potri.001G041140 [exp]	19.49	0.8874
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	20.49	0.9187
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Potri.009G088700 [exp]	21.90	0.8955
AT5G08540			unknown protein		Potri.010G254800 [exp]	23.06	0.9170

Compare expression of checked genes

Potri.001G289700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.