Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44910 668 / 0 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19670 661 / 0 ATPRP40B pre-mRNA-processing protein 40B (.1) AT3G19840 100 / 5e-21 ATPRP40C pre-mRNA-processing protein 40C (.1) AT4G16280 49 / 1e-05 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G41020 49 / 1e-05 WW domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085400 [exp] 1392 / 0 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.014G013100 [exp] 754 / 0 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.010G170400 [exp] 119 / 6e-27 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.010G147900 [exp] 55 / 4e-07 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 49 / 2e-05 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006142 [exp] 895 / 0 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10033770 [exp] 832 / 0 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10018659 [exp] 642 / 0 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10007723 [exp] 608 / 0 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10030562 [exp] 130 / 2e-30 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10012908 [exp] 119 / 4e-27 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10006305 [exp] 50 / 2e-06 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4) Lus10029574 [exp] 49 / 2e-05 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 48 / 5e-05 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 47 / 6e-05 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [poplar] [flax] WW PF00397 [poplar] [flax] WW WW domain CL0584 [poplar] [flax] FF PF01846 [poplar] [flax] FF FF domain
Representative CDS sequence Show only first row Show all	>Potri.001G289800.1 pacid=42788715 polypeptide=Potri.001G289800.1.p locus=Potri.001G289800 ID=Potri.001G289800.1.v4.1 annot-version=v4.1 ATGGCCAACAACCCTCAATTCTCTGGAATGCAGCCTCTCCAGCCTCCTCTGGTTGGCCCCATGGATCATCCTCAAAATTTTGCTCCGCCACCACCAATGC CCATTCAATTCCGACCGGTTGGTCCAGTGCAGCCATCACAGCAATTCATTCCTGTGAGTTCTCCACACTTTCAGCCTGTAGGCCGAGGTGTCACAGTGAT GAATCCAGGATTGCCTCCCCAACCCCCACAACCTCAATTTCCTCACCCAATGCAGCAGTTACCAGCTAGACCTAACCAGCCAAGCCTTGGTCCACCACCA CCTCAGGCAATTCCATTACCAAATGCTCAGCCAAACAGGCATGTCATGTCTGGATCTCCACTGCCTCCACCTAGTGTTCAAACTCCAAACAGCTACATGC CTGGTTTAGGTGGCCCAGGAGTGCCTCTATCGTCATCGTATACTTTTGCACCGTCTTCATATGGTCAACCACCTGTAACCTTTAATGCTGTAACTCAATT TCAGCCCATGCCTCAAATGCATGTACAGCCTATTCCCACTGGAGGACACCCTGCATCATCCATGAACCATAACACTGCACCAGTTACACCTATACAGCGC AATGGCGAACAATCTTCAGTTACCACTACTAATGTTCGGGCAACAAGTATCCAGCCTAAGCCGACTGAAGAAGCCTTGACAGAGTGGAAAGAACATACAT CTGCTAATGGAAGGAGATTTTATTACAATAAGAGGACAAGGCAATCTAGTTGGGAGAAGCCTTATGAGTTGCTGACGCCAATTGAGAGGGCAGATGCATC AACTGACTGGAAGGAGTTTAAGAGTCCTGATGGACGAAAATATTACTACAATAAAGTTACCAAGCAGTCAAAATGGGAAATCCCAGAAGAATTGAAGTTG GCCCGTGCACGAGTAGAAAATACATCTACCATGGAAAAACAATCAGAAGTCTTTACTAATTCTCATGCCTCTACTTCTGTTCCTCAATCCGCGGATAAGA CACCATCAATTGTAGATGCTTCTACAGCTCAAGGGGCACCATCGAGTCCGGTTCTTGTTATACCTGTTGCTGCTGCTGGTAATTCACAGTCGCAGTTAGC TTCTGAATCATCGACCTTACCTGTCATGTCATCTTCCATGACGACCAATGCAGATGAAGTTCAGACAATTGAGATTCCTGTTGCTGATGTTCCAAAAAGT GCTGAAGTCACTGCCACAGCGGTGAACACCATAACTGCACCAATGAACAACTTTTCAGATCAAGATAAACCTAGTTCAGCAGATGAAGCTCCCGCACAAG ACAAAGAGGAAGCTGAAAAGGAGGTGGTCATAGATGAAAAGGTTAACAATGTTCCATTGGAAGAGAAAGCAGTTAATCATGAGCCCTTACTTTATGCTGA TAAGCTGGAAGCAAAAAATTTATTTAAAGCACTTCTGGAATCTGCAAATGTTGGGTCTGAATGGACATGGGACCAGGCCATGAGAGTAATAATTAATGAT AAAAGATATGGTGCATTAAAAACACTTGGAGAGAGAAAGCAAGCATTTAATGAGTTCTTGGGTCAAAAGAGAAAACAGGAAGCTGAGGAAAGGAGGATTA AACAGAAAAAAGCACGGGAAGAATTCAAGAACATGCTAGAAGAGTCCAAAGAGCTGACAGCATCAATTAGATTGAGCAAAGCAGTGACTTTGTTTGAAAA CGATGAGCGTTTTAAAGCTGTTGAACGGGAAAGAGACCGTAAGGATCTGATTGAAACCTACTTGCAGGAACTTGAAGAAAAGGAACGAGCAAAGGCACAG GAGCAGCGCAAGAGGAACATTATGGAATATAGGCAGTTTCTGGAATCATGCGAATTCATTAAGGCAAGCACCCAGTGGCGAAAAGTACAAGATCGGTTAG AAGCTGATGAAAGATGTTCACGTCTTGAAAAAATTGATCGCATAGAAATTTTTCAGGATTATTTACATGATTTGGAGAAGGAAGAAGAGGAGCAAAGGAA GATACATAAGGAAGAGCTGAGAAAGGCAGAGCGTAAAAATCGTGATGAGTTCCGCAAGCTACTTGAAGAACATGTTGCTGCAGGCACTCTTACTGCCAAA ACTAACTGGCGTGATTATCACCTGAAGGTTAAAGATTTACCTGCATATGTGGCTGTTGCTTCAAACAACTCAGGTTCAACTCCAAAAGATTTGTTTGAAG ATGTCGCTGAGGAGCTACAGAAACAGTATCATGAGGACAAAACTCGGATAAAGGATGTTGTAAAGTTGAAAAAGGTTCCGTTGGCATCAACCTGGACACT TGAAGATTTGAAGGTTGCTATTATCGAGGATGTTGGCTCTCCACATATATCAGATGTGAACCTAAAGATGGTATTTGATGAATTGCTGGAAAGAGCCAGG GAAAAGGAGGAGAAAGAAGCCAGGAAGCGTAAACGTCTTGAGGATGATTTTCTCATTCTACTACAGTCTATTAAGGATATTACTGCATCTTCTAAGTGGG AGAGCTGCAAGGAAATCTTTGATGGTAGCCGAGAATACAGTTCCATTGGTGAAGAAGGCTTCTGTAGAGAGATATTTGAGGAATATGTATCTCAACTGAA AGATCAGGAGAAAGAGAATGAGTGGAAACGAAAGGAGGAAAAGGCAAAAAAGGAAAAAGAGAGGGAGGAAAGAGAAAGGAGGAAAGCAAAACACAGAAGG GAAAAGGAGAGGGGACATGATAGAGAAACAAGAAAGGAAGAAGAAGATGTTGAAATTGATGATACAATAGAAACTCAAGTTTGTAGTGATAAGAAAAGAT CTGGGAGTGACAATAGCAGGAAACAGAGGAAGAGGCATCAAAATGCTGTGGATGATCTGGATGAAAGCGAGAAGGATAGGTCCAAGAGTTCACACAGACA TAGCAGCAGCGACCTCAAAAAATCAAGAAGGCATGCTTCCACTCCTGAGTCAGATAGTGAAAGCAGGCACAAGAGACACAAGAGAGACCACCGAAATAGT TCTCGTAGAACTGGTGATCTTGAGGATCTTGAAGATGGGGAATTTGGTGAGGATAGGGAAACTCGGTAG
AA sequence Show only first row Show all	>Potri.001G289800.1 pacid=42788715 polypeptide=Potri.001G289800.1.p locus=Potri.001G289800 ID=Potri.001G289800.1.v4.1 annot-version=v4.1 MANNPQFSGMQPLQPPLVGPMDHPQNFAPPPPMPIQFRPVGPVQPSQQFIPVSSPHFQPVGRGVTVMNPGLPPQPPQPQFPHPMQQLPARPNQPSLGPPP PQAIPLPNAQPNRHVMSGSPLPPPSVQTPNSYMPGLGGPGVPLSSSYTFAPSSYGQPPVTFNAVTQFQPMPQMHVQPIPTGGHPASSMNHNTAPVTPIQR NGEQSSVTTTNVRATSIQPKPTEEALTEWKEHTSANGRRFYYNKRTRQSSWEKPYELLTPIERADASTDWKEFKSPDGRKYYYNKVTKQSKWEIPEELKL ARARVENTSTMEKQSEVFTNSHASTSVPQSADKTPSIVDASTAQGAPSSPVLVIPVAAAGNSQSQLASESSTLPVMSSSMTTNADEVQTIEIPVADVPKS AEVTATAVNTITAPMNNFSDQDKPSSADEAPAQDKEEAEKEVVIDEKVNNVPLEEKAVNHEPLLYADKLEAKNLFKALLESANVGSEWTWDQAMRVIIND KRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKAREEFKNMLEESKELTASIRLSKAVTLFENDERFKAVERERDRKDLIETYLQELEEKERAKAQ EQRKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRIEIFQDYLHDLEKEEEEQRKIHKEELRKAERKNRDEFRKLLEEHVAAGTLTAK TNWRDYHLKVKDLPAYVAVASNNSGSTPKDLFEDVAEELQKQYHEDKTRIKDVVKLKKVPLASTWTLEDLKVAIIEDVGSPHISDVNLKMVFDELLERAR EKEEKEARKRKRLEDDFLILLQSIKDITASSKWESCKEIFDGSREYSSIGEEGFCREIFEEYVSQLKDQEKENEWKRKEEKAKKEKEREERERRKAKHRR EKERGHDRETRKEEEDVEIDDTIETQVCSDKKRSGSDNSRKQRKRHQNAVDDLDESEKDRSKSSHRHSSSDLKKSRRHASTPESDSESRHKRHKRDHRNS SRRTGDLEDLEDGEFGEDRETR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.001G289800 [exp]	0	1
AT1G10890			unknown protein		Potri.001G211000 [exp]	1.00	0.8842
AT5G67320		HOS15	high expression of osmotically...		Potri.007G050100 [exp]	2.00	0.8763
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	5.47	0.8362
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.008G032800 [exp]	6.24	0.8580
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.009G085400 [exp]	6.48	0.7867
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	9.53	0.8229
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	11.13	0.8425
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Potri.018G128100 [exp]	18.89	0.6985
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	19.18	0.8214
AT2G44430			DNA-binding bromodomain-contai...		Potri.009G023100 [exp]	19.59	0.7495	BRD908

Compare expression of checked genes

Potri.001G289800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.