Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33540 405 / 3e-139 SCPL18 serine carboxypeptidase-like 18 (.1) AT1G73300 380 / 1e-129 SCPL2 serine carboxypeptidase-like 2 (.1) AT5G36180 376 / 1e-127 SCPL1 serine carboxypeptidase-like 1 (.1) AT1G73270 370 / 2e-125 SCPL6 serine carboxypeptidase-like 6 (.1) AT3G12203 369 / 3e-125 SCPL17 serine carboxypeptidase-like 17 (.1) AT1G73280 368 / 8e-125 SCPL3 serine carboxypeptidase-like 3 (.1) AT2G22920 364 / 1e-123 SCPL12 serine carboxypeptidase-like 12 (.1.2.3) AT2G22980 364 / 3e-123 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4) AT2G23010 363 / 6e-123 SCPL9 serine carboxypeptidase-like 9 (.1.2) AT1G73310 363 / 1e-122 SCPL4 serine carboxypeptidase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G291300 [exp] 762 / 0 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 761 / 0 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G290900 [exp] 759 / 0 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 753 / 0 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.013G124900 [exp] 414 / 2e-142 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G312800 [exp] 412 / 1e-141 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 300 / 2e-97 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 279 / 3e-89 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.005G091700 [exp] 189 / 8e-55 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007731 [exp] 427 / 2e-147 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 397 / 5e-125 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10010895 [exp] 340 / 1e-113 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10007732 [exp] 336 / 5e-112 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10012718 [exp] 331 / 4e-111 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10025859 [exp] 310 / 3e-101 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 303 / 2e-98 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 299 / 7e-93 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 287 / 2e-92 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 293 / 5e-91 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.001G290800.4 pacid=42787697 polypeptide=Potri.001G290800.4.p locus=Potri.001G290800 ID=Potri.001G290800.4.v4.1 annot-version=v4.1 TTCCTTGTATTCACTCTACTGCTACTCTCCGATGCCGCTGCATCAAAATCAATAATCAAGTCCCTACCTGGCTTTGACGGTAACCTTCCATTTGTACTGG AAACAGGGTATATTGGCGTGGGAGAATTGGAAGCCGTGCAGCTATTCTACTACTTCATCGAGTCTGAGAGGAGCCCTAAAGACGACCCTCTTGTGCTTTG GCTCACTGGTGGCCCTGGATGCTCTGCCCTGTCTGGACTTATATATGAAATTGGTGCCCCGTTATCATTTGATTATGCAAAATCCAGCGGAGGAGGCAAA CCTGTTTTCGCATTGAACCCGTATTCGTGGACAAAGATTGCCAACATAATATTTGTAGATGCACCTGTTGGTACCGGATTTTCCTATTCAACTACATGGG AAGGCTACCAAGTTAGTGATACATTGTCAGCTGCAGAAACTTATGAGTTCTTAAGAAAGTGGCTCGTGGATCACCCCAGGTTTCTTACAAATCCACTCTA TGTTGCTGGGGACTCCTATTCAGGCATCGTTGCACCTATCATAGTCCAGGAGATTTCTGATGGAAATGAAGTGGGACGTCAGCCAACAATGAACCTCAAA GGATATGTGCTTGGAAACCCACTTACAGATCATGAGATTGACACCAATTCAATAGTTCCTTTTGCTCACCTAAAAGCGCTTATATCAGATAAACTCTACG AGTCCTTCATGAAAACTTGCAAGGGTGAGTACTTAAATCCAGATCAAAGCAACGCATCGTGTATGGAAGACATATTAGCCATCAAGGAGTGCATTGGAAA TTTACATAATACACAAATTCTGGAACCTGCATTCAAGGTCGTATCCCCAAAACCAGTGGCATTGAAATGGGATCCAAGGTTTCTCATAGCCGATGACGCT GATATTCTGCTATCAAGTCCCCGTGTTCCTGGACCTTGGTGCCGGAGTTACGATCATGAATACATCTATGGGTGGGCGAATGATGAAACTGTTCGAGATG CTCTTCATATTCGCAAGGGAACCATAAAGGATTGGAGAAGATGCAATAAGACGCTGGCCTATTCGTACAATGTCGAAAGTACTGTTGATTACCATCGGAA CTTGACCAAGAAACCATATCGAGCTCTCATTTACAGTGGCGATCATGGCATGCTTATCCCATACGTTGGCACGCTTGAATGGATAGAATCTCTGAATTTG ACGATTAAGTATGACTGGGAACCATGGTTTGTTGATGGTCAAGTTGCAGGGTTAGTA
AA sequence Show only first row Show all	>Potri.001G290800.4 pacid=42787697 polypeptide=Potri.001G290800.4.p locus=Potri.001G290800 ID=Potri.001G290800.4.v4.1 annot-version=v4.1 FLVFTLLLLSDAAASKSIIKSLPGFDGNLPFVLETGYIGVGELEAVQLFYYFIESERSPKDDPLVLWLTGGPGCSALSGLIYEIGAPLSFDYAKSSGGGK PVFALNPYSWTKIANIIFVDAPVGTGFSYSTTWEGYQVSDTLSAAETYEFLRKWLVDHPRFLTNPLYVAGDSYSGIVAPIIVQEISDGNEVGRQPTMNLK GYVLGNPLTDHEIDTNSIVPFAHLKALISDKLYESFMKTCKGEYLNPDQSNASCMEDILAIKECIGNLHNTQILEPAFKVVSPKPVALKWDPRFLIADDA DILLSSPRVPGPWCRSYDHEYIYGWANDETVRDALHIRKGTIKDWRRCNKTLAYSYNVESTVDYHRNLTKKPYRALIYSGDHGMLIPYVGTLEWIESLNL TIKYDWEPWFVDGQVAGLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G290800 [exp]	0	1
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291300 [exp]	5.65	0.9544
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.002G045000 [exp]	10.24	0.9234	AUX22.5
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G312800 [exp]	12.08	0.9429
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072741 [exp]	25.29	0.9117
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.001G398200 [exp]	25.76	0.9148
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067800 [exp]	29.18	0.9110	ACTI.3
					Potri.004G213900 [exp]	39.79	0.9101
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	41.32	0.9106
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014500 [exp]	48.49	0.9080
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019700 [exp]	49.37	0.9037

Compare expression of checked genes

Potri.001G290800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.