Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33540 430 / 8e-148 SCPL18 serine carboxypeptidase-like 18 (.1) AT1G73300 427 / 4e-147 SCPL2 serine carboxypeptidase-like 2 (.1) AT5G36180 424 / 7e-146 SCPL1 serine carboxypeptidase-like 1 (.1) AT1G73270 419 / 1e-143 SCPL6 serine carboxypeptidase-like 6 (.1) AT3G10450 413 / 1e-141 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT2G22990 412 / 3e-141 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT3G12203 412 / 4e-141 SCPL17 serine carboxypeptidase-like 17 (.1) AT1G73280 410 / 2e-140 SCPL3 serine carboxypeptidase-like 3 (.1) AT2G23000 409 / 6e-140 SCPL10 serine carboxypeptidase-like 10 (.1) AT5G09640 408 / 5e-139 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G291800 [exp] 926 / 0 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G291300 [exp] 895 / 0 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 823 / 0 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 759 / 0 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G312800 [exp] 476 / 1e-165 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.013G124900 [exp] 467 / 2e-162 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.014G177500 [exp] 328 / 3e-107 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 311 / 8e-101 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G291450 [exp] 286 / 7e-95 AT2G22960 149 / 3e-45 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007731 [exp] 482 / 6e-168 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 446 / 1e-141 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10010895 [exp] 386 / 1e-130 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10007732 [exp] 384 / 1e-129 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10012718 [exp] 336 / 6e-112 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10025859 [exp] 338 / 3e-111 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 328 / 5e-107 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 317 / 8e-103 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 318 / 3e-99 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 306 / 4e-95 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.001G290900.1 pacid=42788405 polypeptide=Potri.001G290900.1.p locus=Potri.001G290900 ID=Potri.001G290900.1.v4.1 annot-version=v4.1 ATGTCCGTTATCCGACTCCGAAACACACGTTGCCACTTAATCAATATGATGTTATTCCTTGCATTCACTCTACTGCTACTCTCCGATGCCGCTGCATCAA AATCAATAATCAAGTCCCTACCTGGCTTTGACGGTAATCTTCCATTTGTATTGGAAACAGGGTATATTGGCGTGGGAGAATTGGAAGCCGTGCAGCTATT CTACTACTTCATCGAGTCTGAGAGGAGCCCAAAAGATGACCCTCTTGTGCTTTGGCTCACTGGTGGCCCTGGATGCTCTGCCCTGTCTGGAATTATATAT GAAATTGGCCCGTTATCATTTGATTATGCAAAATCCAGCGGAGGAGGCAAACCTGTTTTCGCATTGAACCCATATTCATGGACAAAGATTGCCAACATAA TATTTGTAGATGCACCTGTTGGTACCGGATTTTCCTATTCAACAACAGGGGAAGGCTACCATGTTAGTGATACAATATCAGCTGCAGAAACCTATGAGTT CTTAAGAAAGTGGCTTGTGGATCACCCCAAGTTTCTTACAAATCCACTCTATGTTGCTGGGGACTCCTTTTCAGGCATCGTTGCACCTATCATAGTCCAG GAGATTTCTGATGGAAATGAAGTGGGACGTCAGCCAACAATAAACCTCAAAGGATATGTGCTTGGAAACCCACTTACAGATCATGAGATTGACACCAATT CAATAGTTCCTTTTGCTCTCCTAAAAGCGCTTATATCAGATAAACTCTACGAGTCCTTCATGAAAAATTGCAAGGGTGAGTACTTAAATCCAGATCAAAG CAACGCATCGTGTATGGAAGACATATTAGCTATCAAGGAGTGCATTGGAAAAGTATATACTGGACAAATTCTGGAACCTACATGCAAGGACGTATCCCCA AAACCAGTGGCATTGAAATGGGATCCAAGGTTTCTCATAGCCGATGACGCTGATATTCTGCTACCAAGCCCCCGTGTTCCTGGACCTTGGTGCCGGAATT ACAATCATGTATACATCTATGGGTGGGCTAATGATGAAACTGTTCGAGATGCTCTTCATATTCGCAAGGGAACCATAAAGGATTGGAGAAGATGCAATAA GACCCTGGCCTATTCGTACAATGTCGAAAGTACTGTTGATTACCATCGGAACTTGACCAAGAAACCATATCGATCTCTCATTTACAGTGGCGATCATGAC ATGACTATCCCATACATTGGCACGCATGAATGGATAGAATCTCTGAATTTGACGATTAAGTATGACTGGGAACCATGGTTTGTTGATGGTCAAGTTGCAG GATACACAATGCTGTATGCAGACAATGTGCAAGATTACATAACATACGACCTGACATTTGCAACTGTGAAGGGAGGGGGTCACACAGCGTCAGAATACAG GCCAGAGCAGTGCTTTGCCATGATGGATAGGTGGTTTGATTACTACCCTCTATAA
AA sequence Show only first row Show all	>Potri.001G290900.1 pacid=42788405 polypeptide=Potri.001G290900.1.p locus=Potri.001G290900 ID=Potri.001G290900.1.v4.1 annot-version=v4.1 MSVIRLRNTRCHLINMMLFLAFTLLLLSDAAASKSIIKSLPGFDGNLPFVLETGYIGVGELEAVQLFYYFIESERSPKDDPLVLWLTGGPGCSALSGIIY EIGPLSFDYAKSSGGGKPVFALNPYSWTKIANIIFVDAPVGTGFSYSTTGEGYHVSDTISAAETYEFLRKWLVDHPKFLTNPLYVAGDSFSGIVAPIIVQ EISDGNEVGRQPTINLKGYVLGNPLTDHEIDTNSIVPFALLKALISDKLYESFMKNCKGEYLNPDQSNASCMEDILAIKECIGKVYTGQILEPTCKDVSP KPVALKWDPRFLIADDADILLPSPRVPGPWCRNYNHVYIYGWANDETVRDALHIRKGTIKDWRRCNKTLAYSYNVESTVDYHRNLTKKPYRSLIYSGDHD MTIPYIGTHEWIESLNLTIKYDWEPWFVDGQVAGYTMLYADNVQDYITYDLTFATVKGGGHTASEYRPEQCFAMMDRWFDYYPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G290900 [exp]	0	1
AT2G22960			alpha/beta-Hydrolases superfam...		Potri.001G291450 [exp]	1.41	0.9357
					Potri.004G212550 [exp]	6.00	0.8991
					Potri.012G082300 [exp]	7.41	0.8679
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.005G150400 [exp]	8.48	0.8789
AT1G10690			unknown protein		Potri.010G045200 [exp]	9.16	0.8626
AT5G54930			AT hook motif-containing prote...		Potri.001G422966 [exp]	10.48	0.8402
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	12.68	0.8625
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Potri.005G075700 [exp]	14.07	0.8414
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.004G095400 [exp]	14.28	0.8045	LPP3.2
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014000 [exp]	14.69	0.8504

Compare expression of checked genes

Potri.001G290900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.