Plant FIBer expression Database

Potri.001G291700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33540 415 / 6e-142 SCPL18 serine carboxypeptidase-like 18 (.1)
AT1G73300 400 / 3e-136 SCPL2 serine carboxypeptidase-like 2 (.1)
AT5G36180 397 / 5e-135 SCPL1 serine carboxypeptidase-like 1 (.1)
AT1G73280 390 / 2e-132 SCPL3 serine carboxypeptidase-like 3 (.1)
AT3G10450 390 / 3e-132 SCPL7 serine carboxypeptidase-like 7 (.1.2)
AT3G12203 388 / 2e-131 SCPL17 serine carboxypeptidase-like 17 (.1)
AT1G73270 384 / 6e-130 SCPL6 serine carboxypeptidase-like 6 (.1)
AT2G22920 382 / 2e-129 SCPL12 serine carboxypeptidase-like 12 (.1.2.3)
AT1G73310 382 / 2e-129 SCPL4 serine carboxypeptidase-like 4 (.1)
AT2G22980 382 / 4e-129 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G291800
[exp]
826 / 0 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1)
Potri.001G290900
[exp]
825 / 0 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1)
Potri.001G291300
[exp]
808 / 0 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1)
Potri.001G290800
[exp]
753 / 0 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1)
Potri.001G312800
[exp]
439 / 5e-151 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1)
Potri.013G124900
[exp]
435 / 1e-149 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1)
Potri.014G177500
[exp]
306 / 1e-98 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1)
Potri.019G054300
[exp]
288 / 5e-92 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1)
Potri.001G291450
[exp]
218 / 3e-68 AT2G22960 149 / 3e-45 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007731
[exp]
436 / 8e-150 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1)
Lus10018667
[exp]
405 / 1e-126 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1)
Lus10010895
[exp]
357 / 3e-119 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1)
Lus10007732
[exp]
352 / 4e-117 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1)
Lus10012718
[exp]
337 / 1e-112 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1)
Lus10025859
[exp]
320 / 2e-104 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1)
Lus10038240
[exp]
310 / 4e-100 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1)
Lus10009562
[exp]
303 / 9e-94 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1)
Lus10020387
[exp]
302 / 5e-93 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1)
Lus10020206
[exp]
291 / 1e-92 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF00450 Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence
>Potri.001G291700.3 pacid=42787874 polypeptide=Potri.001G291700.3.p locus=Potri.001G291700 ID=Potri.001G291700.3.v4.1 annot-version=v4.1
ATGTCCGTTATCCGACTCCGGAACACACGTTGCCACTTAATCAATATGATGTTATTCCTTGCATTCACTCTACTACTACTCTCCGATGCCGCTGCATCAA
AATCAATAATCAAGTCCCTACCTGGCTTTGACGGTAACCTTCCATTTGTACTGGAAACAGGGTATATTGGCGTGGGAGAATTGGAAGCCGTGCAGCTATT
CTACTACTTCATCGAGTCTGAGAGGAGCCCAAAAGATGACCCTCTTGTGCTTTGGCTCACTGGTGGCCCTGGATGCTCTGCCCTGTCTGGAATTATATAT
GAAATTGGCCCGTTATCATTTGATTATGCAAAATCCAGCGGAGGAGGCAAACCTGTTTTGGCATTGAACCCATATTCATGGACAAAGATTGCCAACATAA
TATTTGTAGATGCACCTGTTGGTACCGGATTTTCCTATTCAACAACATGGGAAGGCTACCATGTTAGTGATACAATATCAGCTGCAGAAACCTATGAGTT
CTTAAGAAAGTGGCTTGTGGATCACCCTAAGTTTCTTACAAATCCACTCTATGTTGCTGGGGACTCCTATACAGGCATCGTTGCACCTATCATTGTCCAG
GAGATTTCTGATGGAAATGAAGTGGGACATCAGCCAACAATGAACCTCAAAGGATATGTGCTTGGAAACCCACGTACAGATTATGAGATTCAAATCAATT
CAATAGTTCCTTTTGCTCACCTAAAAGTGCTTATATCAGATAAACTCTACGAGTCCTTCATGAAAAATTGCAAGGGTGAGTACTTAAATCCAGATCAAAG
GAACGCATCGTGTATGGAAGACATATTAGCCATCAAGGAGTGCATTCGAAATTTATGTAATGCACACATTCTGGAACCTACATGCAAGGACATATCCCCA
AAACCAGTGCCATTGAAATGGGATCCAAGGTTTCTCATAGCCGATGACGCTGATATTCTGCTATCAAGTCCCCGTGTTCCTGGACCTTGGTGCCGGAGTT
ACAATTATGTATACATTTATATGTGGGCTAATGATGAAACTGTTCGAGATGCTCTTCATATTCGCAAGGGAACCATAAAGGATTGGAGAAGATGCAATAA
GACCCTGGCCTATTCGTACAATGTCAAAAGTACTGTTGATTACCATCGGAACTTGACCAAGAAACCATATCGAGCTCTCATTTACAGTGGCGATCATGAT
ATGCTTATCCCATACGTTGGTACGCTTGAATGGATAGAATCTCTGAATTTGACGATTAAGTATGACTGGGAACCATGGTTTGTTGATGGTCAAGTTGCAG
GATACGCAATGCTGTATGCAGACAATGTGCAAGATTACATAACATACGACCTGACATTTGGAACTGTGAAGCTGAATCAAGGAACATTCATCTTGGGCTA
TGTACAAACGGATTCAATCCATTCGGGTCATTTGCTGCTCCTTATTCTTGTTGGCCGGTTATACTAA
AA sequence
>Potri.001G291700.3 pacid=42787874 polypeptide=Potri.001G291700.3.p locus=Potri.001G291700 ID=Potri.001G291700.3.v4.1 annot-version=v4.1
MSVIRLRNTRCHLINMMLFLAFTLLLLSDAAASKSIIKSLPGFDGNLPFVLETGYIGVGELEAVQLFYYFIESERSPKDDPLVLWLTGGPGCSALSGIIY
EIGPLSFDYAKSSGGGKPVLALNPYSWTKIANIIFVDAPVGTGFSYSTTWEGYHVSDTISAAETYEFLRKWLVDHPKFLTNPLYVAGDSYTGIVAPIIVQ
EISDGNEVGHQPTMNLKGYVLGNPRTDYEIQINSIVPFAHLKVLISDKLYESFMKNCKGEYLNPDQRNASCMEDILAIKECIRNLCNAHILEPTCKDISP
KPVPLKWDPRFLIADDADILLSSPRVPGPWCRSYNYVYIYMWANDETVRDALHIRKGTIKDWRRCNKTLAYSYNVKSTVDYHRNLTKKPYRALIYSGDHD
MLIPYVGTLEWIESLNLTIKYDWEPWFVDGQVAGYAMLYADNVQDYITYDLTFGTVKLNQGTFILGYVQTDSIHSGHLLLLILVGRLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33540 SCPL18 serine carboxypeptidase-like 1... Potri.001G291700
[exp]
0 1
AT1G73300 SCPL2 serine carboxypeptidase-like 2... Potri.001G291800
[exp]
1.41 0.9122
AT2G22960 alpha/beta-Hydrolases superfam... Potri.001G291450
[exp]
3.74 0.8850
AT3G20540 PolIB, POLGAMMA... polymerase I B, polymerase gam... Potri.001G421300
[exp]
4.58 0.8683
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Potri.013G002200
[exp]
6.92 0.8470 SOYAP2.2
AT4G39400 DWF2, CBB2, BIN... DWARF 2, CABBAGE 2, BRASSINOST... Potri.007G078100
[exp]
7.07 0.8519 Pt-BRI1.2
AT3G52750 FTSZ2-2 Tubulin/FtsZ family protein (.... Potri.006G083100
[exp]
11.04 0.7878
AT4G39400 DWF2, CBB2, BIN... DWARF 2, CABBAGE 2, BRASSINOST... Potri.005G086500
[exp]
12.00 0.8596 Pt-BRI1.1
AT1G73360 HD ATHDG11, HDG11,... ENHANCED DROUGHT TOLERANCE 1, ... Potri.015G034100
[exp]
12.24 0.8497
AT2G18570 UDP-Glycosyltransferase superf... Potri.007G030500
[exp]
13.56 0.7789 Pt-CGT5.1
AT1G17260 AHA10 autoinhibited H\(+\)-ATPase is... Potri.001G161400
[exp]
13.96 0.8362 AHA10.1

Potri.001G291700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.