Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73300 432 / 1e-148 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G33540 432 / 1e-148 SCPL18 serine carboxypeptidase-like 18 (.1) AT5G36180 431 / 2e-148 SCPL1 serine carboxypeptidase-like 1 (.1) AT1G73270 425 / 8e-146 SCPL6 serine carboxypeptidase-like 6 (.1) AT3G10450 422 / 6e-145 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT1G73280 417 / 9e-143 SCPL3 serine carboxypeptidase-like 3 (.1) AT2G23000 416 / 2e-142 SCPL10 serine carboxypeptidase-like 10 (.1) AT3G12203 414 / 1e-141 SCPL17 serine carboxypeptidase-like 17 (.1) AT2G22990 412 / 3e-141 SCPL8, SNG1 SERINE CARBOXYPEPTIDASE-LIKE 8, sinapoylglucose 1 (.1.2.3.4.5.6) AT1G73310 412 / 8e-141 SCPL4 serine carboxypeptidase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290900 [exp] 949 / 0 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G291300 [exp] 913 / 0 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 848 / 0 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 780 / 0 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.013G124900 [exp] 473 / 9e-165 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G312800 [exp] 470 / 2e-163 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 336 / 2e-110 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 325 / 4e-106 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.001G291450 [exp] 290 / 2e-96 AT2G22960 149 / 3e-45 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007731 [exp] 479 / 5e-167 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10018667 [exp] 448 / 3e-142 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10010895 [exp] 393 / 2e-133 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10007732 [exp] 382 / 3e-129 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10012718 [exp] 342 / 2e-114 AT1G73300 384 / 2e-131 serine carboxypeptidase-like 2 (.1) Lus10025859 [exp] 345 / 4e-114 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 335 / 8e-110 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 325 / 3e-106 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 321 / 2e-100 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10026831 [exp] 301 / 8e-97 AT4G12910 596 / 0.0 serine carboxypeptidase-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.001G291800.1 pacid=42793355 polypeptide=Potri.001G291800.1.p locus=Potri.001G291800 ID=Potri.001G291800.1.v4.1 annot-version=v4.1 ATGTCCGTTATCCGACTCCGAAACACACATTGCCACTTAATCAATATGATGTTATTCCTTGTATTCACTCTACTGCTACTCTCCAATGTCGCTGCATCAA AATCAATAATCAAGTCTCTACCTGGCTTTGACGGTAACCTTCCATTTGTACTGGAAACAGGGTATATTGGCGTGGGAGAATTGGAAGCCGTGCAGCTATT CTACTACTTCATCGAGTCTGAGAGGAGCCCAAAAGATGACCCTCTTGTGCTTTGGCTCACTGGTGGCCCTGGATGCTCTGCCCTGTCTGGAATTATATAT GAAATTGGCCCGTTATCATTTGATTATGCAAAATCCAGCGGAGGAGGCAAACCTGTTTTTGCATTGAACCCGTATTCATGGACAAAGATTGCCAACATAA TATTTGTAGATGCACCTGTTGGTACCGGATTTTCCTATTCAACTACATGGGAAGGCTACCATGTTAGTGATACAATATCAGCTGCAGAAACCTATGAGTT CTTAAGAAAGTGGCTCGTGGATCACCCCAAGTTTCTTGCAAATCAACTCTATGTTGCTGGGGACTCCTTTTCAGGCATCGTTGCACCTATCATAGTCCAG GAGATTTCTGACGGAAATGAAGTGGGACGTCAGCCAACAATGAACCTCAAAGGATATGTGCTTGGAAACCCACTTACAGATCATGAGATTGACACCAATT CAATAGTTCCTTTTGCTCACCTAAAAGCGCTTATATCAGATAAACTCTACGAGTCCTTCATGAAAAATTGCAAGGGTGAGTACTTAAATCCAGATCAAAG CAACGCATCGTGTATGGAAGACATATTAGCCATCAAGGAGTGCATTGGAAAAGTATATACTGGACAAATTCTGGAACCTACATGCAAGGACGTATCCCCA AAACCAGTGGCATTGAAATGGGATCCAAGGTTTCTCATAGCCGATGACGCTGATATTCTGCTACCACGCCCCCGTGTTCCTGGACCTTGGTGCCGGAGTT ACAATCATGTATACATCTATGGGTGGGCGAATGGTGAAACTGTTCGAGATGCTCTTCATATTCGCAAGGGAACCATAAAGGATTGGAGAAGATGCAATAA GACCCTGGCCTATTCGTACAATGTCGAAAGTACTGTTGATTACCATCGGAACTTGACCAAGAAACCATATCGATCTCTCATTTACAGTGGCGATCATGAC ATGACTATCCCATACATTGGCACGCATGAATGGATAGAATCTCTGAATTTGACGATTAAGTATGACTGGGAACCATGGTTTGTTGATGGTCAAGTTGCAG GATACGCAATGCTGTATGCAGACAATGCGCAAGACTACATAACATACGACCTGACATTTGCAACTGTGAAGGGAGGGGGTCACACAGCGCCGGAATACAG GCCAGAGCAGTGCTTTGCCATGATGGATAGGTGGTTTGATTACTACCCTCTATAA
AA sequence Show only first row Show all	>Potri.001G291800.1 pacid=42793355 polypeptide=Potri.001G291800.1.p locus=Potri.001G291800 ID=Potri.001G291800.1.v4.1 annot-version=v4.1 MSVIRLRNTHCHLINMMLFLVFTLLLLSNVAASKSIIKSLPGFDGNLPFVLETGYIGVGELEAVQLFYYFIESERSPKDDPLVLWLTGGPGCSALSGIIY EIGPLSFDYAKSSGGGKPVFALNPYSWTKIANIIFVDAPVGTGFSYSTTWEGYHVSDTISAAETYEFLRKWLVDHPKFLANQLYVAGDSFSGIVAPIIVQ EISDGNEVGRQPTMNLKGYVLGNPLTDHEIDTNSIVPFAHLKALISDKLYESFMKNCKGEYLNPDQSNASCMEDILAIKECIGKVYTGQILEPTCKDVSP KPVALKWDPRFLIADDADILLPRPRVPGPWCRSYNHVYIYGWANGETVRDALHIRKGTIKDWRRCNKTLAYSYNVESTVDYHRNLTKKPYRSLIYSGDHD MTIPYIGTHEWIESLNLTIKYDWEPWFVDGQVAGYAMLYADNAQDYITYDLTFATVKGGGHTAPEYRPEQCFAMMDRWFDYYPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Potri.001G291800 [exp]	0	1
AT2G22960			alpha/beta-Hydrolases superfam...		Potri.001G291450 [exp]	1.41	0.9337
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291700 [exp]	1.41	0.9122
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	3.87	0.9102
AT3G01750			Ankyrin repeat family protein ...		Potri.008G179100 [exp]	4.47	0.8785
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	6.32	0.9034
AT5G52540			Protein of unknown function (D...		Potri.004G079300 [exp]	8.06	0.8755
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	8.77	0.8763
					Potri.004G212550 [exp]	11.53	0.8860
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G085000 [exp]	11.61	0.8912
AT1G65060		4CL3	4-coumarate:CoA ligase 3 (.1.2...		Potri.019G049500 [exp]	12.72	0.8711	Ptr4CL4,4CL3.1

Compare expression of checked genes

Potri.001G291800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.