Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19640 147 / 4e-43 MRS2-3, MGT4 magnesium transporter 4 (.1) AT1G16010 78 / 5e-18 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT1G80900 78 / 6e-18 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT5G64560 77 / 8e-18 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT3G58970 73 / 3e-16 MRS2-4, MGT6 magnesium transporter 6 (.1) AT5G09690 73 / 3e-16 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT2G03620 69 / 1e-14 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT5G09710 56 / 3e-10 Magnesium transporter CorA-like family protein (.1) AT4G28580 45 / 2e-06 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G086300 [exp] 165 / 3e-50 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098200 [exp] 97 / 6e-25 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.007G098000 [exp] 92 / 4e-23 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.006G081700 [exp] 79 / 2e-18 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.003G183600 [exp] 79 / 3e-18 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G043200 [exp] 79 / 3e-18 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.010G077900 [exp] 76 / 2e-17 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.008G161400 [exp] 76 / 3e-17 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G158100 [exp] 67 / 6e-14 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026745 [exp] 157 / 3e-48 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10022218 [exp] 80 / 1e-18 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10024860 [exp] 80 / 2e-18 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10026063 [exp] 80 / 2e-18 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 80 / 2e-18 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10021887 [exp] 79 / 3e-18 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10008803 [exp] 79 / 4e-18 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10001373 [exp] 78 / 4e-18 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10015459 [exp] 77 / 2e-17 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10037081 [exp] 65 / 2e-13 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G291932.1 pacid=42791971 polypeptide=Potri.001G291932.1.p locus=Potri.001G291932 ID=Potri.001G291932.1.v4.1 annot-version=v4.1 ATGCTCTTGGAGGCGTACTTTGTACAAATTGATGGCACATTGAACAAACTATGTACGCTGATGGAGTATGTTGATGACACAGAGGACCACATCAACATAA TGCTGGATGACAAACAGAATCATCTCCTGCAAATGGGGGTTGTGTTGACGACAGCAACCTTAGTGGTGAGCTGCTTTGTTGTAGTTGTTGGTGTTTTTGG CAAGAATTTCGGAATCAAAATGTTCAAAGAAGTGCAAGCTGGAATGTCGAAGTTTCTATGGACTGTTGCTGGTGGCACTACTGGGAGCATGTTCTTATAT GTGATTGCTATTGCCTGGTGCAAGCACAGGCGATTGTTAGACAATTGA
AA sequence Show only first row Show all	>Potri.001G291932.1 pacid=42791971 polypeptide=Potri.001G291932.1.p locus=Potri.001G291932 ID=Potri.001G291932.1.v4.1 annot-version=v4.1 MLLEAYFVQIDGTLNKLCTLMEYVDDTEDHINIMLDDKQNHLLQMGVVLTTATLVVSCFVVVVGVFGKNFGIKMFKEVQAGMSKFLWTVAGGTTGSMFLY VIAIAWCKHRRLLDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291932 [exp]	0	1
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	2.00	0.8603
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.013G047800 [exp]	2.44	0.8401
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G190950 [exp]	2.82	0.8339
AT1G49180			protein kinase family protein ...		Potri.019G011600 [exp]	16.24	0.8511
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.017G039301 [exp]	19.89	0.7969
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.001G211200 [exp]	21.14	0.7693
AT1G17330			Metal-dependent phosphohydrola...		Potri.007G072000 [exp]	21.63	0.7561
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Potri.004G085500 [exp]	24.37	0.7463
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	32.12	0.7977
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Potri.016G092000 [exp]	36.33	0.7578

Compare expression of checked genes

Potri.001G291932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.