Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33800 85 / 1e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G086600 [exp] 246 / 1e-83 AT4G33800 77 / 1e-17 unknown protein Potri.002G117600 [exp] 86 / 8e-21 AT4G33800 72 / 3e-16 unknown protein Potri.014G015000 [exp] 78 / 1e-17 AT4G33800 63 / 2e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006135 [exp] 105 / 6e-28 AT4G33800 54 / 3e-09 unknown protein Lus10033772 [exp] 94 / 1e-23 AT4G33800 69 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G292100.2 pacid=42789748 polypeptide=Potri.001G292100.2.p locus=Potri.001G292100 ID=Potri.001G292100.2.v4.1 annot-version=v4.1 ATGAATTTCCTGGCCTCAGAATGCAGTGCTGATTGTGAGTCTGGTTGGACACTATACTTGGAACAATCTTTTCTTTCTAACCCAAATTCTAAACATAGAA ATAAGACCAACTTTGTTGATGCAGAGAGTGCTGGTTTTTGTAGAAAAGGTAAAAACACTAGAGAGGAGAGTGAAGAAGATGAGGAGGAGGAGGAGGAGGA GGAGGAGGAGGACTTGTCTATGGTCTCTGACGCATCTTCTGGTCCTCCACATTTCCATGAAGATGAAAGTTACTTCAACTGTGATAATGGCCACTTTTAT CCATCACTCAAGGGCACTACATTGCTGAACAATGGTGCCAATTATAGGCAAAAAAAGAAAGAACATAGCCGTCAGTCACGTCACAGACAGGATCAAGAAC TGCCTCCTTTTCTTGATGATACTGCTAGCTCTCCTGCATTCAACTTCTCCAAGCAGAATAATTTTGCTCTCTCCAACAGTAACCAAGATTCAATGGAGAG TGTCTTCGATCATTCACAAAGTTTTTCAGCAACTCATTTTCAGGGAAGATCTACATATCAAGACCACATTGGTTACACACACCCTTCTCTATCTGGAAAC AAACTTCAAAATAACCAGTTAAGTATGTTTCATAATTATATTTAG
AA sequence Show only first row Show all	>Potri.001G292100.2 pacid=42789748 polypeptide=Potri.001G292100.2.p locus=Potri.001G292100 ID=Potri.001G292100.2.v4.1 annot-version=v4.1 MNFLASECSADCESGWTLYLEQSFLSNPNSKHRNKTNFVDAESAGFCRKGKNTREESEEDEEEEEEEEEEDLSMVSDASSGPPHFHEDESYFNCDNGHFY PSLKGTTLLNNGANYRQKKKEHSRQSRHRQDQELPPFLDDTASSPAFNFSKQNNFALSNSNQDSMESVFDHSQSFSATHFQGRSTYQDHIGYTHPSLSGN KLQNNQLSMFHNYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33800			unknown protein		Potri.001G292100 [exp]	0	1
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G134000 [exp]	2.44	0.9051
AT5G01740			Nuclear transport factor 2 (NT...		Potri.016G129500 [exp]	3.46	0.9008
AT5G42110			unknown protein		Potri.011G151900 [exp]	3.74	0.8804
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.019G091900 [exp]	4.47	0.8908
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G188300 [exp]	4.69	0.9171	Pt-CHI5.2
AT3G48550			unknown protein		Potri.012G097901 [exp]	5.65	0.8787
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.005G122200 [exp]	6.55	0.8454
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	11.13	0.9034
AT5G45280			Pectinacetylesterase family pr...		Potri.004G233900 [exp]	12.96	0.8116
					Potri.002G252400 [exp]	14.96	0.8986

Compare expression of checked genes

Potri.001G292100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.