Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14680 607 / 0 MEE13 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087100 [exp] 1017 / 0 AT2G14680 608 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010456 [exp] 669 / 0 AT2G14680 576 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3) Lus10003821 [exp] 667 / 0 AT2G14680 567 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G292800.3 pacid=42789528 polypeptide=Potri.001G292800.3.p locus=Potri.001G292800 ID=Potri.001G292800.3.v4.1 annot-version=v4.1 ATGGATACAAATTTAAACGACAAGGAGTCCATGATTGCTCGAATCCAACAATTGGAACATGAGCGTGGTGAATTGCATAAAGATATAGAACAATTGTGTA TGCAGCAAGCTGGACCTGGCTATCTTGCTGCCGCTACTCGAATGCATTTTCAAAGGACAGCTGGATTGGAGCAGGAGATTGAGAATTTGAAAAAGCAGTT GGCTGCTTGCTCAAGAGATAATCTTAATCTTCAAGAGGAGCTTTCTGAGGCTTACCGAATCAAAACCCAATTGGCCAAACTACACCAAGCAGAGGCTGCA AAGAACATGGAGGCAGAGAAACAGGTTAAGTTTTTCCAAGGCTGTGTAGCTGCTGCTTTTGCTGAGCGTGATAATTCGATAATGGAGGCTGAAAAGGCAA AGGAGAAGGAGGAGTCAATGTCCCAGAAATTTAAGGAAATTCAGCAGAGGTTAGAAGTGCTTAATTCAGATTTTCTTGAACAGAAGAGACTAAATGATAC ACTGCAGAGTGATTTATCAAAGCAAGATGAGCAGATTGAGACTTTCAAGAAGGTTGTCAACAAGTTTTACGAGATCAGGCAGCATTCTCTTGAGGGATTT GAGGATACTAGTTGGGACAATAAATGTGCATGGCTGTTACATGACTCAGAAGAGTTGTGGAGTTATAATGATTCCTCGACTTCTAAATACATTAGTGCGT TAGAAGAAGAGGTGGAGACACTGAGGAACTCTCTGGATAAGCTTCAAAGCAAAATACGAGTGGGTTTGGAAATTGAAAATCACTTAAAGAAGAAAGTTCT TGAACTTGAAAATAAGCAAGTTCTTTGGGACAAAATGGTTATGGAGGGGATAACAGAATTACACCATTACCATTCTCACCATAGAGTTCAGATCACGAGT TTACTTAGCAAGGAAAGATCTCATATCAAATCAATTATTGATATGGTAGAAGAAAAGATCAAGCAATTTGATGTGATCAGCGAACAGGATTTGGTGCCTT GTAGAGTTGTAAGACTGCAAGAAAATGAATTTCGAGATGTGCATATGAGTACTGATGCTGATCCGGACTTGGCACCCAAGAGAATTGACCAAGGAGCACT AGATGCTGTGGCTCATAAAGAAGGCAACACATCTGAAGCCCTTGCACAGGCCATGCAAGAAAAGGTTGCAGCATTATTGCTTTTATCTCAGCAGGAAGAA AGACATTTACTGGAGAGAAATGTCAATGCAGCTCTTCAGAAAAAGATGGAGGAGCTTCAAAGAAACTTTCTACAAGTCACCAATGAAAAGGTTAAAGCTC TTATGGAGTTGGCGCAGTTAAAGCTCGAATATCAACAACTACAAAAAAAAGTTGGCAGTGAAATAAAACGAGATTTTTCAGCTGAAACTGGGGAGATGAG ACTTTCTAATATAGAAAGGGATGGAAAGATAAGAAACCTGTTGAAGAGGACATATCTAAGACGTTGGATGGGCACAATGGATTTTCGTGGAAATGAAGCT CAAACTTGCCTGAGTAGTGAAGGGAATTTCTCTAGGAAAAGAGCAAATGACATGGATTTTGCCAGAATGAAGATTGAAAATGCCACTCTCAAGGAAAGCA TGGAATGTATGGACCACCTAATTTCTTCAATTCACAGACTTCACCTTGCACTTCTAAAGGTCAAAGAGTCAGATACTCGTGAAGGTACTAGTACTGGCTT GCTAGAAGCTCTTAATGATATCATTTCTGAGGCTAGACTTGTGAAGACTGCCCTTGGAAGCTCCTTACCTGTTAGTTGGTCTGCTGAGGCAGATGATGCA TCAATTGGTGAAAGTGTCTGCGATGAGCTAAGTGATATTTATGGGAACCCCATTGGAGAGAAGATAGATTCTGTTTCTGCTGCAGGTTTTGAGATGGTGG AGCTTCTGATACTTGCAGCTCAGATACTAAAGGACAATAACACCATAAAGGGTTGCTGA
AA sequence Show only first row Show all	>Potri.001G292800.3 pacid=42789528 polypeptide=Potri.001G292800.3.p locus=Potri.001G292800 ID=Potri.001G292800.3.v4.1 annot-version=v4.1 MDTNLNDKESMIARIQQLEHERGELHKDIEQLCMQQAGPGYLAAATRMHFQRTAGLEQEIENLKKQLAACSRDNLNLQEELSEAYRIKTQLAKLHQAEAA KNMEAEKQVKFFQGCVAAAFAERDNSIMEAEKAKEKEESMSQKFKEIQQRLEVLNSDFLEQKRLNDTLQSDLSKQDEQIETFKKVVNKFYEIRQHSLEGF EDTSWDNKCAWLLHDSEELWSYNDSSTSKYISALEEEVETLRNSLDKLQSKIRVGLEIENHLKKKVLELENKQVLWDKMVMEGITELHHYHSHHRVQITS LLSKERSHIKSIIDMVEEKIKQFDVISEQDLVPCRVVRLQENEFRDVHMSTDADPDLAPKRIDQGALDAVAHKEGNTSEALAQAMQEKVAALLLLSQQEE RHLLERNVNAALQKKMEELQRNFLQVTNEKVKALMELAQLKLEYQQLQKKVGSEIKRDFSAETGEMRLSNIERDGKIRNLLKRTYLRRWMGTMDFRGNEA QTCLSSEGNFSRKRANDMDFARMKIENATLKESMECMDHLISSIHRLHLALLKVKESDTREGTSTGLLEALNDIISEARLVKTALGSSLPVSWSAEADDA SIGESVCDELSDIYGNPIGEKIDSVSAAGFEMVELLILAAQILKDNNTIKGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.001G292800 [exp]	0	1
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.002G004600 [exp]	1.00	0.7728
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Potri.009G165600 [exp]	3.46	0.7595
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.019G080300 [exp]	3.74	0.7233
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	5.19	0.7074
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Potri.008G201500 [exp]	8.94	0.6776	RNR2.1
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	10.19	0.7331
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Potri.010G210100 [exp]	10.19	0.7223
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	10.72	0.7277
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.008G078200 [exp]	13.41	0.6447
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.014G018000 [exp]	13.96	0.6841

Compare expression of checked genes

Potri.001G292800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.