Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10200 318 / 4e-112 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1) AT3G55770 224 / 3e-75 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT2G39900 224 / 7e-75 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT1G01780 199 / 4e-65 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT2G45800 199 / 1e-64 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT3G61230 197 / 3e-64 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087200 [exp] 394 / 2e-142 AT1G10200 316 / 2e-111 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.014G015600 [exp] 330 / 4e-117 AT1G10200 327 / 8e-116 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.002G118000 [exp] 328 / 2e-116 AT1G10200 325 / 7e-115 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.015G072400 [exp] 296 / 1e-103 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.012G077200 [exp] 282 / 3e-98 AT1G10200 268 / 2e-92 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.010G193800 [exp] 229 / 5e-77 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.008G063600 [exp] 228 / 6e-77 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.003G124300 [exp] 207 / 5e-68 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.001G107100 [exp] 204 / 4e-67 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018674 [exp] 322 / 2e-113 AT1G10200 323 / 4e-114 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10039010 [exp] 318 / 5e-112 AT1G10200 285 / 2e-99 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10027305 [exp] 314 / 2e-110 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10007748 [exp] 312 / 2e-109 AT1G10200 308 / 5e-108 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10010455 [exp] 302 / 7e-106 AT1G10200 277 / 3e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10004230 [exp] 295 / 7e-103 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 295 / 7e-103 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10043462 [exp] 273 / 5e-94 AT1G10200 260 / 2e-89 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10034123 [exp] 255 / 1e-86 AT3G55770 244 / 1e-82 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Lus10003822 [exp] 261 / 2e-86 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00412 [poplar] [flax] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Potri.001G292900.2 pacid=42788002 polypeptide=Potri.001G292900.2.p locus=Potri.001G292900 ID=Potri.001G292900.2.v4.1 annot-version=v4.1 ATGGCAGCCTTTGCAGGAACCCAGCAAAAATGTATGGCTTGTGACAAGACAGTGTATCTTGTTGATAAGTTAACGGCTGATAACAGGATTTATCACAAGG CCTGCTTTAGATGCCACCATTGCAGGGGTACCCTTAAGCTAAGCAACTACAGTTCTTTTGAAGGGGTTCTGTACTGCAGACCTCACTATGACCAACTCTT CAAGAGAACTGGCAGTCTAGACAAGAGTTTCGAAGGAACACCAAAAATTGTGAAACCAGAAAAACCTGTTGATAATGAGAACGCAAGCAAAGTCTCGAAT TTGTTTGCTGGCACCAGAGAAAAATGTGTTGGGTGCAACAAGACTGTCTATCCTATCGAGAAGGTTACAGTAAATGGGACTCCATACCATCGGAGCTGTT TTAAGTGTACCCATGGAGGTTGTACTATTAGCCCATCCAACTACATTGCACATGAGGGAAAACTCTACTGCAAGCATCACCATATCCAACTTTTCAAGGA GAAAGGGAACTACAGCCAGCTTGAGAATGAACGCGAGAAAAATCCAGTCACTGTGAATATCACCGCTGTGGAAATTGCCGCTGAATCATAA
AA sequence Show only first row Show all	>Potri.001G292900.2 pacid=42788002 polypeptide=Potri.001G292900.2.p locus=Potri.001G292900 ID=Potri.001G292900.2.v4.1 annot-version=v4.1 MAAFAGTQQKCMACDKTVYLVDKLTADNRIYHKACFRCHHCRGTLKLSNYSSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKIVKPEKPVDNENASKVSN LFAGTREKCVGCNKTVYPIEKVTVNGTPYHRSCFKCTHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLENEREKNPVTVNITAVEIAAES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	0	1
AT4G19045			Mob1/phocein family protein (....		Potri.001G132700 [exp]	1.00	0.9236
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.012G123900 [exp]	4.89	0.8928
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	5.29	0.9073
AT1G09160			Protein phosphatase 2C family ...		Potri.013G011600 [exp]	6.32	0.8644
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	7.07	0.8938
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.002G118000 [exp]	8.12	0.9047
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	9.59	0.8986	ARAC2.1
AT1G80950			Phospholipid/glycerol acyltran...		Potri.014G042200 [exp]	10.39	0.8768
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.017G134900 [exp]	10.95	0.8738	TMK1.1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.016G010200 [exp]	11.22	0.8753

Compare expression of checked genes

Potri.001G292900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.