Plant FIBer expression Database

Potri.001G293001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G293001.1 pacid=42792857 polypeptide=Potri.001G293001.1.p locus=Potri.001G293001 ID=Potri.001G293001.1.v4.1 annot-version=v4.1
ATGGTTGTCTTGCCATTTATACTCGACCATTACTTTTTAATAGAACTTCAAATCAGGGTCAGCAAAAGTAAAAGTTCATTGGCATGCTCTGTGAAGTTCC
ATCAACTTCATTACTGTCTGTGTTTTGGTAGTCGGGGTGGGCAAAATCGAGGGCCTTTTGGATCTAATCAGGCTACAGATTATGTTCATTTACGAAGCCT
AAATTTTATCGTGTTGTTTCAAGGCAGTGTCCAGTTCATTTTTGTCACCCGTGCAGTCCATTCCATGTCATATTTTGGTTCTGTAGTAAATCAGACACTT
GTCAATGTTGTTATTTTTCTGGAATCATTTACCAATCAAATCTGCAGTGGAGCTTCTCTTCTAAAATGA
AA sequence
>Potri.001G293001.1 pacid=42792857 polypeptide=Potri.001G293001.1.p locus=Potri.001G293001 ID=Potri.001G293001.1.v4.1 annot-version=v4.1
MVVLPFILDHYFLIELQIRVSKSKSSLACSVKFHQLHYCLCFGSRGGQNRGPFGSNQATDYVHLRSLNFIVLFQGSVQFIFVTRAVHSMSYFGSVVNQTL
VNVVIFLESFTNQICSGASLLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G293001
[exp]
0 1
AT5G39040 AtALS1, ABCB27,... ARABIDOPSIS THALIANA TRANSPORT... Potri.016G106650
[exp]
5.65 0.7193
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Potri.003G212300
[exp]
12.96 0.6956
AT4G34000 bZIP AtABF3, ABF3, D... DC3 PROMOTER-BINDING FACTOR 5,... Potri.009G101200
[exp]
14.14 0.6896
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Potri.007G063900
[exp]
16.61 0.6778
AT1G21610 wound-responsive family protei... Potri.007G101201
[exp]
17.74 0.6975
AT5G62270 unknown protein Potri.017G017901
[exp]
18.02 0.7055
AT5G04610 S-adenosyl-L-methionine-depend... Potri.010G234600
[exp]
23.45 0.6438
AT3G04160 unknown protein Potri.019G029400
[exp]
25.09 0.7117
AT1G60200 splicing factor PWI domain-con... Potri.010G094700
[exp]
29.69 0.7003
AT4G27220 NB-ARC domain-containing disea... Potri.005G042400
[exp]
45.17 0.6746

Potri.001G293001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.