Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49870 348 / 1e-124 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 345 / 2e-123 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT5G37680 322 / 5e-114 ATARLA1A ADP-ribosylation factor-like A1A (.1) AT3G49860 281 / 6e-98 ATARLA1B ADP-ribosylation factor-like A1B (.1) AT1G10630 112 / 1e-31 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G24765 112 / 2e-31 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G47170 112 / 3e-31 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G70490 111 / 5e-31 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 111 / 5e-31 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT3G62290 110 / 7e-31 ATARFA1E ADP-ribosylation factor A1E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087400 [exp] 373 / 2e-134 AT3G49870 349 / 5e-125 ADP-ribosylation factor-like A1C (.1) Potri.017G130500 [exp] 325 / 2e-115 AT5G37680 355 / 6e-127 ADP-ribosylation factor-like A1A (.1) Potri.004G086200 [exp] 314 / 5e-111 AT5G37680 328 / 1e-116 ADP-ribosylation factor-like A1A (.1) Potri.018G096077 [exp] 115 / 2e-32 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 115 / 2e-32 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 114 / 3e-32 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.010G152600 [exp] 114 / 4e-32 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 114 / 5e-32 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 112 / 1e-31 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019259 [exp] 356 / 1e-127 AT3G49870 355 / 5e-127 ADP-ribosylation factor-like A1C (.1) Lus10025201 [exp] 355 / 2e-127 AT3G49870 353 / 1e-126 ADP-ribosylation factor-like A1C (.1) Lus10012090 [exp] 354 / 9e-127 AT3G49870 353 / 2e-126 ADP-ribosylation factor-like A1C (.1) Lus10011545 [exp] 252 / 3e-87 AT3G49870 243 / 9e-84 ADP-ribosylation factor-like A1C (.1) Lus10014991 [exp] 114 / 1e-31 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 111 / 6e-31 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 110 / 1e-30 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 110 / 2e-30 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10005749 [exp] 109 / 5e-30 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2) Lus10038871 [exp] 111 / 1e-29 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.001G293100.1 pacid=42791498 polypeptide=Potri.001G293100.1.p locus=Potri.001G293100 ID=Potri.001G293100.1.v4.1 annot-version=v4.1 ATGGGGTTATGGGAAGCTTTTCTCAATTGGCTACGAAGTCTCTTTTTCAAGCAAGAAATGGAGCTGTCTCTTATAGGACTTCAGAATGCTGGGAAAACTT CTCTTGTAAATGTTGTCGCTACTGGTGGATATAGCGAAGACATGATCCCAACAGTTGGATTTAACATGAGGAAGGTTACAAAAGGCAATGTCACAATAAA GTTGTGGGATCTTGGAGGTCAACCAAGGTTCCGCAGTATGTGGGAGAGATATTGTCGCGCAGTTTCAGCCATTGTATATGTCGTGGATGCCGCTGATTTT GATAATTTATCTGTCTCGAGAAGTGAACTTCACGATCTTTTAAGTAAACCCTCTCTGAGTGGTATCCCTTTGCTGGTACTGGGAAATAAGATTGACAAAC CAGGAGCCTTGTCCAAGGAAGATTTCATGGAACAAATGGGGCTTAAGTCCATCACCGACAGAGAAGTATGCTGCTACATGATCTCATGCAAGAACTCAAC CAACATCGACACAGTTATTGACTGGCTTGTAAAACATTCAAAATCGAAGACTTGA
AA sequence Show only first row Show all	>Potri.001G293100.1 pacid=42791498 polypeptide=Potri.001G293100.1.p locus=Potri.001G293100 ID=Potri.001G293100.1.v4.1 annot-version=v4.1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADF DNLSVSRSELHDLLSKPSLSGIPLLVLGNKIDKPGALSKEDFMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.001G293100 [exp]	0	1
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.009G087400 [exp]	1.41	0.8696
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.010G041000 [exp]	2.44	0.8324
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	3.16	0.8724
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	5.00	0.8336
AT4G34720		ATVHA-C1, AVA-P...	VACUOLAR H+-PUMPING ATPASE C1,...		Potri.004G163400 [exp]	7.74	0.8630	AVAP5.1
AT5G47570			unknown protein		Potri.001G122200 [exp]	10.39	0.8610
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Potri.008G051700 [exp]	12.00	0.8098	Pt-RAB1.11
AT4G30010			unknown protein		Potri.018G142500 [exp]	21.90	0.8261
AT5G47890			NADH-ubiquinone oxidoreductase...		Potri.001G071900 [exp]	24.81	0.8185
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.003G136200 [exp]	27.11	0.7766	Pt-UBC.9

Compare expression of checked genes

Potri.001G293100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.