Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 301 / 4e-92 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 291 / 1e-88 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 199 / 3e-55 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G64530 153 / 2e-39 NLP6 Plant regulator RWP-RK family protein (.1) AT1G76350 147 / 1e-37 NLP5 Plant regulator RWP-RK family protein (.1) AT4G38340 134 / 2e-33 NLP3 Plant regulator RWP-RK family protein (.1) AT3G59580 126 / 1e-30 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G24020 117 / 2e-27 NLP7 NIN like protein 7 (.1) AT2G43500 109 / 4e-25 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G35590 57 / 2e-08 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087500 [exp] 722 / 0 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 374 / 3e-119 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 365 / 3e-116 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 309 / 3e-95 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 296 / 3e-90 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 283 / 2e-85 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 272 / 1e-81 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 241 / 5e-70 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 135 / 1e-33 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012257 [exp] 229 / 6e-66 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014428 [exp] 177 / 1e-47 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 176 / 2e-47 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10022621 [exp] 151 / 8e-40 AT2G17150 212 / 3e-60 Plant regulator RWP-RK family protein (.1.2) Lus10014429 [exp] 144 / 2e-38 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2) Lus10023931 [exp] 139 / 5e-37 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 139 / 7e-35 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10030744 [exp] 136 / 7e-34 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 135 / 2e-33 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 135 / 3e-33 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.001G293300.3 pacid=42787709 polypeptide=Potri.001G293300.3.p locus=Potri.001G293300 ID=Potri.001G293300.3.v4.1 annot-version=v4.1 ATGGAAGGTGGTGCCTTCAGGAAAAATACAATATTCAGGGCCACCTCGGACACTTTTATGGACTTGAATTTCACGGATGAACTCTTGGTTCAAGGATATT GGTGCGAGAGAAGTGATGGAGTCAACTTTTTCGAGCCTGAACCTTCCATCTCTAGTGTTGTGTATGACCCTTCACCATATTTGCCTTGTATGGGGTCTGG TCATTTGAGTATAAACACACACGATCTGACCTATCAAGAAGAATCAGAGAACTCCCTTGAAAACCCTCCTCCAGTTTATTCTGAAACCGAGGAACAAGTG ACTGAGACCATCACAACTCCAGTACACTCTGAAAGTTCTCAACCTGAAAGCAATGAATTGGTCCCGGAATTCTGCGAATCATGGGAATGTCTGAAACAAG AACCCGAGGAAGAAGAGATGTTCAGAGAGACAGCTGACTGGAATGACAATGATTTAGACCTGTTCCGAGAGCAGGAATTTTCAGAGTTTGGGAACCTTCA ACAAAATCCTGAACACTGTACTGTTGAAAGCGGCCAAGATTCTTATGTTCCCTGGAGTAACTTGTTAGGCAGCAGAAAAAAAGGCAAGAAGAGCCAGACC AAGGCAGAGAAGACAATCAGCTTGCAAGTTCTTCGAAAATACTTTTCTGGGAGCCTTAAAGATGCTGCTAAGAGTATTGGAGTTTGCCCCACCACTCTGA AAAGGATATGCAGGCAATATGGTATCAACCGTTGGCCTTCTCGAAAGATCAAGAAGGTTAACCACTCTTTGAGGAAACTCCAAGTTGTAGTTGACTCTGT CATGGGTGCTCAAGGTCTCATTGAAGTTGATTCTTTTTATACTGCCTTCCCAGAATTGAGCTCCCCTAACTATTCTGGGCATAATCCCTTTTCATCTTTC AAGATAACCGACTACTCAAAGGAATCAAACCCAAAACCTGAGAGTCACTTGTTCAGCCCTGAAGGAACTGATTCAAAATCGCAGTCCTCTTTGAGCAGTC CGAATTCTGGTTTGAGCATCTGTCATGGCCAAAAGCACCTTACCCGCACAGCCAATGGCTCGAGCACTGGACATGCCTCAGCTGTAGAAGACCCTGTCGA GGCGCTGAAGAGAACTTGCAGTAAATCAGAAATAAATTCCTTGAATCAGGAGGAATTTGCTAGAGCCAAAAGCCATGAAACATTAGGCCAGCATCAAAAT CTGGGGACTCAAGCACGCCTAGCAATAAGTAATAGCCAGGGTTTACAAGATGGAGGTGCCTTTAGAGTTAAAGCCACTTTTGGTCATGAAAATATCCGTT TTAGCTTGCAAGCAAATTGGGGTTTCAGTGACTTGCGACGAGAGATTGCAAAGCGTTTTGATATATATGATTTCAGCAGAATTGGTCTCAAGTATTTGGA CAACGAACACGAGTCAGTTCTTTTGACTTGTGATGCTGATCTTGAAGAGTGTAAAGATTTGCTTGGCTTCTCTCAGAGTCGCACAATCAAAATAACCCTC TATCCGGTTTCCACACCAATTCTAGGAAGTTCATTCAGCAGCAGCAGAGACTTGTTCTGA
AA sequence Show only first row Show all	>Potri.001G293300.3 pacid=42787709 polypeptide=Potri.001G293300.3.p locus=Potri.001G293300 ID=Potri.001G293300.3.v4.1 annot-version=v4.1 MEGGAFRKNTIFRATSDTFMDLNFTDELLVQGYWCERSDGVNFFEPEPSISSVVYDPSPYLPCMGSGHLSINTHDLTYQEESENSLENPPPVYSETEEQV TETITTPVHSESSQPESNELVPEFCESWECLKQEPEEEEMFRETADWNDNDLDLFREQEFSEFGNLQQNPEHCTVESGQDSYVPWSNLLGSRKKGKKSQT KAEKTISLQVLRKYFSGSLKDAAKSIGVCPTTLKRICRQYGINRWPSRKIKKVNHSLRKLQVVVDSVMGAQGLIEVDSFYTAFPELSSPNYSGHNPFSSF KITDYSKESNPKPESHLFSPEGTDSKSQSSLSSPNSGLSICHGQKHLTRTANGSSTGHASAVEDPVEALKRTCSKSEINSLNQEEFARAKSHETLGQHQN LGTQARLAISNSQGLQDGGAFRVKATFGHENIRFSLQANWGFSDLRREIAKRFDIYDFSRIGLKYLDNEHESVLLTCDADLEECKDLLGFSQSRTIKITL YPVSTPILGSSFSSSRDLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.001G293300 [exp]	0	1
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G087500 [exp]	1.73	0.8238
AT1G78860			D-mannose binding lectin prote...		Potri.011G110200 [exp]	3.31	0.8371
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.001G328600 [exp]	6.70	0.7692
AT4G27290			S-locus lectin protein kinase ...		Potri.010G017450 [exp]	12.80	0.7293
AT1G80440			Galactose oxidase/kelch repeat...		Potri.001G178300 [exp]	16.49	0.8117
AT4G34950			Major facilitator superfamily ...		Potri.005G112400 [exp]	18.16	0.7895
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G006800 [exp]	18.97	0.7999
AT1G65820			microsomal glutathione s-trans...		Potri.017G140900 [exp]	20.32	0.7881
AT1G52190			Major facilitator superfamily ...		Potri.018G041400 [exp]	23.32	0.7855
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.002G154000 [exp]	23.91	0.7780	NAC101

Compare expression of checked genes

Potri.001G293300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.