Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14750 365 / 6e-128 APK1, ATAKN1, APK ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) AT3G03900 323 / 1e-112 APK3 adenosine-5'-phosphosulfate (APS) kinase 3 (.1) AT4G39940 315 / 6e-108 APK2, AKN2 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 2, APS-kinase 2 (.1) AT5G67520 312 / 8e-107 APK4 adenosine-5'-phosphosulfate (APS) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G088100 [exp] 516 / 0 AT2G14750 367 / 8e-129 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Potri.013G057900 [exp] 326 / 1e-113 AT3G03900 355 / 2e-126 adenosine-5'-phosphosulfate (APS) kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014641 [exp] 396 / 5e-140 AT2G14750 365 / 5e-128 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Lus10033788 [exp] 389 / 3e-137 AT2G14750 355 / 7e-124 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01583 [poplar] [flax] APS_kinase Adenylylsulphate kinase
Representative CDS sequence Show only first row Show all	>Potri.001G293400.1 pacid=42790677 polypeptide=Potri.001G293400.1.p locus=Potri.001G293400 ID=Potri.001G293400.1.v4.1 annot-version=v4.1 ATGAATACTATCGGTTTTAAGCCAGCACTGCCTGTAATTTCGGGCTCGAAAAAGCTCGGACTTTTTAGCTTCAATGGTGGCAATCAACCCATTGATTTTA AACCGAGAGGGGTTTGCCTGATCAAGGTTGCCATGGAAGAGACACAGACGCTTAAAGTGGATGTTCAGGGCAAGGTGGATAAGTTGGCAAATGGGCATGC AGGGAAAAATCACAGCCATTTGTCTACAATAGGGAATTCAACAAACATAAAGTGGCATGAGTGCCCAGTTGAAAAAATTGACAGGCAGAAGCTTCTCCAA CAAAAGGGTTGTGTTATATGGATCACCGGTCTCAGTGGTTCAGGGAAGAGCTCTGTGGCATGTGCCTTGAGTCAAATGCTGTACCAGAGAGGAAAGTTGT CATACATTCTTGATGGCGACAATGTCAGGCATGGCCTCAATCGTGACCTTAGTTTTAAAGCAGAAGACCGTGTTGAGAACATAAGGAGAGTTGGGGAGGT AGCGAAACTATTTGCAGATGCTGGATTTATTTGCATCGCCTGCCTGATCTCTCCGTACAAAAGGGATCGGGCTGCCTGTCGAGCAATGTTACCAAGTGGA GATTTCATTGAGGTGTTTATGGATGTTCCCCTCCGAGTTTGTGAGGACAGAGACCCAAAAGGCTTGTATAAGCTTGCTCGTGCTGGGAAGATCAAAGGTT TTACTGGCATTGATGACCCATATGAATCACCATTGGATGCTGAGATAGTATTGCAATGCAACACAGGAGACTGTTCTACCCCATGCGACATGGCTGGAAA GGTGATTTCTTACTTGGAGGAAAAAGGGTATCTCCAGGCATAA
AA sequence Show only first row Show all	>Potri.001G293400.1 pacid=42790677 polypeptide=Potri.001G293400.1.p locus=Potri.001G293400 ID=Potri.001G293400.1.v4.1 annot-version=v4.1 MNTIGFKPALPVISGSKKLGLFSFNGGNQPIDFKPRGVCLIKVAMEETQTLKVDVQGKVDKLANGHAGKNHSHLSTIGNSTNIKWHECPVEKIDRQKLLQ QKGCVIWITGLSGSGKSSVACALSQMLYQRGKLSYILDGDNVRHGLNRDLSFKAEDRVENIRRVGEVAKLFADAGFICIACLISPYKRDRAACRAMLPSG DFIEVFMDVPLRVCEDRDPKGLYKLARAGKIKGFTGIDDPYESPLDAEIVLQCNTGDCSTPCDMAGKVISYLEEKGYLQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Potri.001G293400 [exp]	0	1
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Potri.010G204400 [exp]	9.05	0.8991
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080000 [exp]	10.00	0.8743
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079700 [exp]	13.52	0.9179
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G141200 [exp]	26.53	0.8694
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G079500 [exp]	28.93	0.8949
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.008G159400 [exp]	38.88	0.8868	Pt-APG1.1
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G095700 [exp]	41.23	0.8812
AT3G29780		RALFL27	ralf-like 27 (.1)		Potri.017G096300 [exp]	46.07	0.8785
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080200 [exp]	53.88	0.8733
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	63.63	0.8756

Compare expression of checked genes

Potri.001G293400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.