Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49980 825 / 0 DNA/RNA polymerases superfamily protein (.1) AT5G44750 119 / 2e-27 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) AT5G44740 112 / 2e-25 POLH Y-family DNA polymerase H (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094400 [exp] 130 / 4e-31 AT5G44750 1071 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Potri.003G152600 [exp] 102 / 2e-22 AT5G44740 775 / 0.0 Y-family DNA polymerase H (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020986 [exp] 836 / 0 AT1G49980 768 / 0.0 DNA/RNA polymerases superfamily protein (.1) Lus10013870 [exp] 133 / 8e-32 AT5G44750 1025 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Lus10036237 [exp] 107 / 7e-24 AT5G44740 765 / 0.0 Y-family DNA polymerase H (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00817 [poplar] [flax] IMS impB/mucB/samB family PF11799 [poplar] [flax] IMS_C impB/mucB/samB family C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G293600.1 pacid=42792520 polypeptide=Potri.001G293600.1.p locus=Potri.001G293600 ID=Potri.001G293600.1.v4.1 annot-version=v4.1 ATGGAGAAAAACGAGACCTTGTCAGGAGATAAACCTCGTCCATGGCAATCTTACCACACAGTTTACACTAACGCTAAAGCAGGTATGGAAGGAGTGGACA AAGAGAAAGTGCAAAGAATAGTTTATGAAACCAGTAAAGGATCAAAGTATTTTGAGAACGAGGAAAAAAAGGAGGCTTTATTGAGGCAAAAAATTGAAAA CATGCGTGCCCAAAGTGCCAAGCTTAGTGCTGCTGATCTCTCTCATTATCAAACTGTGGCAGATAGAAGAATTTTAGAGCTAGAAGCCATGCGTGATCTT TCGAGGATTTGGTTACATGTGGATATGGATGCTTTCTATGCCGCTGTTGAAACATTGAGCAATCCTTCATTGAAAGGGAAACCGATGGCTGTTGGTGGCT TGTCTATGATCTCGACCGCTAATTATGAGGCACGGAGGTTTGGAGTTCGTGCTGCAATGCCTGGTTTCATTGCTCGTAAATTATGCCCGGAGTTAATTTT TGTTCCTACAGATTTCAAGAAGTATACTCATTACAGTGAATTAACTAGAAAAGTTTTTGAGAAATACGATCCTAATTTCATGGCTGCTAGTTTGGATGAA GCACACCTGGATATAACCGAGGTCTGCAAAGAAAGGGGCATGTCTTGTGGAGAAATTGCCGAAGAACTTAGAAAATGTGTCAACGAAGAGACTGGCCTGA CATGTAGTGCTGGAGTGGCCCCAAACCGCTTACTTGCTAAGGTTTGCTCTGATATAAATAAACCCAATGGACAGTTTGTTTTAACAAATGATCGGATGGC TGTCATGACATTTATATCCTCACTCCCCATAAGGAAGATTGGAGGCATTGGTAAGGTTACTGAACATATACTGAGGGATGCTTTTGGTATTAGTACATGT GAAGAGATGCTCCAGAAGGGCGGGCTCCTCTGTGCACTGTTTTCTCATTCCACAGCAGATTTTTTTCTCTCTGTGGGTTTGGGGATTGGGAAGACAGATA CCCCTCAAGTCAGGTCCCGAAAAAGTATCAGCAGTGAGAGAACTTTTTCAGCCACAGATGATGAGACACTTCTTTATCAGAAATTAGCTGATATTGCAGA GATGCTATGCGCTGACATGAAAAAAGGTGGTCTTTGCGGTCGAACATTGACTCTAAAATTGAAAACTGCATCATTTGAGGTTCGAAGCAGAGCTGTGACT TCGGAAAAATATATTTGCTCAAGTGAAGACATCTTGAAGTATGCTTCAAAGCTGCTAAAGGCTGAACTTCCTATTTCTTTAAGGTTGATGGGCCTACGCT TGTCTCATTTCAATGAAGACAAGATTGGTGCCCCATCTGATCCAACACAAAAAACTCTCAACAACTTCATCGTGTCAGGAGATTTATCTAGGAAAAATTT GGATGATCCAAAATCCTTGGGATTGGATATTAATGATCAACACTTAATGAACAATATGGAAGGTTCCTTTTCTATTGAGAGTCATGAGTTACAACATTAT GGAATTAGAGATCCACTGGCCAGCAATAATCTAGAGGATCTGAATGTTCACCACTGCACTTCCACTGATAGTGTTGAAGCTGAGAAAATCCATGAACCTT CAAGCAACAAAATTGCGGACAAGGTGATTACCAAGGATATGGCAGGGGAAGTGTCACAGTGGAAGGAATCAGGCTTGTCCTTGCCTGGACAGCTTGAGGG GGGAAGCCCTGACAGAATGAACCAGGTCATCATGCACAATGAGGCAGTCTTTTCATCTGAACAGAAAGATGAGTTAGTTTGGGTGGATGACTACAAGTGC TCGCTGTGCGGGATTGAAATGCCGCCATATTTTGATGAAGAGAGACAAGAGCACTCCGACTTCCATCTTGCAGAGAGGCTTCAAAAGGATGAGTCCAGAA TTGACTCAAGAACTTCCGCACTGAGGCAGAGGTCTGTCCAGAAGGACCACATCTCAAGCCAAAGCAAACGTAAGAAGCGCAAGCCATCTCCAAAAGAAGG CGGGCATCTTTCAATTGACATGTTCTTTGCTAAGAGCAATTTGAATTTCTAG
AA sequence Show only first row Show all	>Potri.001G293600.1 pacid=42792520 polypeptide=Potri.001G293600.1.p locus=Potri.001G293600 ID=Potri.001G293600.1.v4.1 annot-version=v4.1 MEKNETLSGDKPRPWQSYHTVYTNAKAGMEGVDKEKVQRIVYETSKGSKYFENEEKKEALLRQKIENMRAQSAKLSAADLSHYQTVADRRILELEAMRDL SRIWLHVDMDAFYAAVETLSNPSLKGKPMAVGGLSMISTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFKKYTHYSELTRKVFEKYDPNFMAASLDE AHLDITEVCKERGMSCGEIAEELRKCVNEETGLTCSAGVAPNRLLAKVCSDINKPNGQFVLTNDRMAVMTFISSLPIRKIGGIGKVTEHILRDAFGISTC EEMLQKGGLLCALFSHSTADFFLSVGLGIGKTDTPQVRSRKSISSERTFSATDDETLLYQKLADIAEMLCADMKKGGLCGRTLTLKLKTASFEVRSRAVT SEKYICSSEDILKYASKLLKAELPISLRLMGLRLSHFNEDKIGAPSDPTQKTLNNFIVSGDLSRKNLDDPKSLGLDINDQHLMNNMEGSFSIESHELQHY GIRDPLASNNLEDLNVHHCTSTDSVEAEKIHEPSSNKIADKVITKDMAGEVSQWKESGLSLPGQLEGGSPDRMNQVIMHNEAVFSSEQKDELVWVDDYKC SLCGIEMPPYFDEERQEHSDFHLAERLQKDESRIDSRTSALRQRSVQKDHISSQSKRKKRKPSPKEGGHLSIDMFFAKSNLNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49980			DNA/RNA polymerases superfamil...		Potri.001G293600 [exp]	0	1
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.008G200800 [exp]	4.00	0.5886	ATMPK16.2
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Potri.009G116400 [exp]	20.63	0.5319
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	22.91	0.5287
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	24.49	0.5405
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	24.73	0.5225
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	27.92	0.4860	SNF4.4
AT5G63220			unknown protein		Potri.010G217400 [exp]	32.24	0.5214
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	47.49	0.5230
AT4G03260			Outer arm dynein light chain 1...		Potri.019G119500 [exp]	53.75	0.4728
AT1G06760			winged-helix DNA-binding trans...		Potri.010G076800 [exp]	57.44	0.4985

Compare expression of checked genes

Potri.001G293600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.