Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67500 203 / 4e-64 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) AT5G15090 165 / 2e-49 VDAC3, ATVDAC3 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 3, voltage dependent anion channel 3 (.1.2) AT3G01280 148 / 6e-43 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) AT5G57490 145 / 5e-42 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1) AT3G49920 111 / 2e-29 VDAC5, ATVDAC5 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 5, voltage dependent anion channel 5 (.1.2) AT5G37610 49 / 5e-07 Eukaryotic porin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294100 [exp] 258 / 4e-85 AT5G67500 225 / 3e-72 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.005G146800 [exp] 221 / 4e-71 AT5G67500 416 / 2e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.007G055800 [exp] 220 / 7e-71 AT5G67500 405 / 7e-144 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.014G016300 [exp] 201 / 1e-63 AT5G67500 344 / 5e-120 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.009G088466 [exp] 169 / 2e-52 AT5G67500 108 / 2e-29 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Potri.017G078200 [exp] 167 / 2e-50 AT3G01280 414 / 9e-148 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.008G194900 [exp] 163 / 1e-48 AT3G01280 418 / 5e-149 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.010G033500 [exp] 157 / 2e-46 AT3G01280 390 / 5e-138 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Potri.018G093900 [exp] 146 / 5e-42 AT5G57490 387 / 9e-137 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 4, voltage dependent anion channel 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019284 [exp] 200 / 6e-63 AT5G67500 362 / 9e-127 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10007739 [exp] 190 / 4e-59 AT5G67500 317 / 5e-109 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10018683 [exp] 187 / 9e-58 AT5G67500 309 / 6e-106 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10011539 [exp] 180 / 6e-55 AT5G67500 340 / 4e-118 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 2, voltage dependent anion channel 2 (.1.2) Lus10015357 [exp] 160 / 2e-47 AT3G01280 385 / 5e-136 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10007267 [exp] 158 / 9e-47 AT3G01280 379 / 1e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10013271 [exp] 152 / 3e-44 AT3G01280 400 / 3e-142 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10030794 [exp] 144 / 1e-40 AT3G01280 379 / 3e-133 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10037212 [exp] 105 / 2e-26 AT3G01280 286 / 1e-96 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1) Lus10036716 [exp] 97 / 4e-23 AT3G01280 265 / 6e-88 ARABIDOPSIS THALIANA VOLTAGE DEPENDENT ANION CHANNEL 1, voltage dependent anion channel 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [poplar] [flax] MBB PF01459 [poplar] [flax] Porin_3 Eukaryotic porin
Representative CDS sequence Show only first row Show all	>Potri.001G294000.1 pacid=42787770 polypeptide=Potri.001G294000.1.p locus=Potri.001G294000 ID=Potri.001G294000.1.v4.1 annot-version=v4.1 ATGAACAGCTCTGATCATCAAGAAAGCGCAAGAAGCAAAGAAACCGGAGGTCCTAGACTCTTCTCTGACTTTGGAAAGCTTGCATATGACCTCCTACGCT ACAAAATTAATCAGTCTTTTAACATCTCGACCAGTAGTGATATTGGATTGACTCTTACCCCGTATGCTGCCAGACGCAAGAAACTATCGAAAGCAGGTGT TACAGCAGAATACAATCTTGAGGATACTCATGCTACTATTAAGGTGGATGTTAATCCGGAATTACCGATTTCAACAACTCTCACAATGAGCAGAACATGG CCATTCATGAAGAACACAGTTTTGGTGAAATTTCCAGATTACAACTCTAGAGAGTTTCAAATTCTGCATGAGGTTCAATACTTCCACAAACGAGCTGCTT TAGCCATGACACTCCCTTTGCTTCGCTCCCCTCTAATTCAGCTTTCTGCAACAGTTGGTACTGCACACCTTGCATTTGGTATGGAAACAATATACAATAC TAGCTCTAGACAATTTCTCATGTTCGACGCAGGCATTAGCATGACAAGCCTGAATTGTGAGGGGTCAATTATATTGGAGAACAAGGGTGATTCTCTAAGG GCATCTTATATCCATTATTTTGATCATGAGAGGAAAGTCGCAGCAGTAGCAGTGATCGGCCGGACGTTATCAAGAAAGGAGAACGCTTTTGCAGTTGGAG CATCATGGATTATGGATGACCTAACTACGATTAAGGCGAGGTTTGATAGTCATGGGAAGCTGGTTACTGTCCTCCATCATAAAATCAAACCCAAGTCATA CTTTACAATTTCTGGTGAATTTGAACCCAAAGCCCTTGACAAGACTCCAGAAATCAGATTAGGTCTCTCTCTCGTGCTCTGA
AA sequence Show only first row Show all	>Potri.001G294000.1 pacid=42787770 polypeptide=Potri.001G294000.1.p locus=Potri.001G294000 ID=Potri.001G294000.1.v4.1 annot-version=v4.1 MNSSDHQESARSKETGGPRLFSDFGKLAYDLLRYKINQSFNISTSSDIGLTLTPYAARRKKLSKAGVTAEYNLEDTHATIKVDVNPELPISTTLTMSRTW PFMKNTVLVKFPDYNSREFQILHEVQYFHKRAALAMTLPLLRSPLIQLSATVGTAHLAFGMETIYNTSSRQFLMFDAGISMTSLNCEGSIILENKGDSLR ASYIHYFDHERKVAAVAVIGRTLSRKENAFAVGASWIMDDLTTIKARFDSHGKLVTVLHHKIKPKSYFTISGEFEPKALDKTPEIRLGLSLVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	0	1
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	2.00	0.7947
AT1G06320			unknown protein		Potri.005G202500 [exp]	2.23	0.8013
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Potri.008G206000 [exp]	5.47	0.7943	GCR1.1
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.008G075800 [exp]	17.72	0.6897
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	28.54	0.7890
AT1G11480			eukaryotic translation initiat...		Potri.017G041300 [exp]	32.24	0.7922
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	33.31	0.7138
AT1G10610	bHLH	bHLH090	basic helix-loop-helix (bHLH) ...		Potri.008G189600 [exp]	38.85	0.7711
					Potri.006G034450 [exp]	41.35	0.7828
AT4G19550			zinc ion binding;transcription...		Potri.001G082800 [exp]	42.89	0.7597

Compare expression of checked genes

Potri.001G294000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.