Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14835 476 / 4e-170 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089100 [exp] 603 / 0 AT2G14835 485 / 1e-173 RING/U-box superfamily protein (.1.2) Potri.008G145000 [exp] 41 / 0.0003 AT4G39900 45 / 3e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002131 [exp] 532 / 0 AT2G14835 459 / 1e-163 RING/U-box superfamily protein (.1.2) Lus10012365 [exp] 529 / 0 AT2G14835 461 / 4e-164 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G294200.1 pacid=42790486 polypeptide=Potri.001G294200.1.p locus=Potri.001G294200 ID=Potri.001G294200.1.v4.1 annot-version=v4.1 ATGGTGGTCTGCAAATGTCGTAAGGCTACCAAGTTATATTGTTTCGTGCACAAAGTTCCCGTTTGTGGGGAATGTATCTGCTTTCCAGAGCATCAAATCT GTGTGGTTCGTACATACTCTGAATGGGTGATAGATGGAGAGTATGACTGGCCTCCAAAATGCTACTCCTGCCAAGCTGTGCTTGAAGAGGGGGATGGTCC TCAAACCACTCGATTGGGTTGCTTGCATGTTATACACACAAATTGTTTGGTTTCACATATCAAAAGCTTTCCTCCACACACAGCACCAGCTGGATATGTG TGCCCTTCGTGTTCAACACCGATATGGCCTCCCAAAAGTGTGAAAGACTCGGGATCCCGTTTTCATTCAAAGCTGAAAGAAGCTATAATGCAGACGGGTT TGGAAAAGAACTTGTTTGGAAATCATCCAGTTTCATTGCTGGCACCACCTCCCACATTCACTTCAGATCCTTTGGTTGCCATTTCTTCATCATTCTCGGT GACAAAAGATGAAACTGGAACAGGGTCTTCTAAAATTTCAGTGTCGGATATTGTGGAGATTGATAGCCCCAATTCTGCAGGGAATTATATGAAAAACTCA AGTCCTGGCATTCCTGGTGCTGCAACACGGAAGGTTGGCGTACATGTTGAGCGGCAAAATTCTGAACTTTCATACTATGCAGATGATGAAGATGGGAATC ATAAGAAGTACAGTCGAAGGGGTTCATTTCGTCACAAGTTCCTCAGAGCTTTGCTTCCTTTCTGGTCCAGTGCATTACCAATTTTACCAGTTACCGCACC TCCACGTAAAGATGCATCAAATGCAGATGATCCCTCAGAAGGTCGTACAAGGCAAAAACGTTCAAGGACAGATCCAAGAAAAATCCTCCTCTTTATAGCA ATCATGGCTTGTATGGCAACTATGGGCATACTATATTACAGAATTGCACAACGGGGTTTTGGGGAGGAGCAGCAGTGA
AA sequence Show only first row Show all	>Potri.001G294200.1 pacid=42790486 polypeptide=Potri.001G294200.1.p locus=Potri.001G294200 ID=Potri.001G294200.1.v4.1 annot-version=v4.1 MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCYSCQAVLEEGDGPQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYV CPSCSTPIWPPKSVKDSGSRFHSKLKEAIMQTGLEKNLFGNHPVSLLAPPPTFTSDPLVAISSSFSVTKDETGTGSSKISVSDIVEIDSPNSAGNYMKNS SPGIPGAATRKVGVHVERQNSELSYYADDEDGNHKKYSRRGSFRHKFLRALLPFWSSALPILPVTAPPRKDASNADDPSEGRTRQKRSRTDPRKILLFIA IMACMATMGILYYRIAQRGFGEEQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14835			RING/U-box superfamily protein...		Potri.001G294200 [exp]	0	1
AT2G21410		VHA-A2	vacuolar proton ATPase A2 (.1)		Potri.002G028600 [exp]	5.38	0.9286
AT4G00560			NAD(P)-binding Rossmann-fold s...		Potri.014G079700 [exp]	7.93	0.9190
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	11.83	0.9226
AT1G20540			Transducin/WD40 repeat-like su...		Potri.005G249800 [exp]	13.74	0.8869
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	15.09	0.9173
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Potri.012G072800 [exp]	15.45	0.8356
AT1G50120			unknown protein		Potri.007G071000 [exp]	17.74	0.9149
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.001G152000 [exp]	19.18	0.9119
AT3G05520			Subunits of heterodimeric acti...		Potri.013G017000 [exp]	21.44	0.9022
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Potri.014G015700 [exp]	24.24	0.8499

Compare expression of checked genes

Potri.001G294200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.