Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33880 164 / 2e-47 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT2G14760 150 / 2e-42 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G27740 135 / 2e-37 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT5G43175 122 / 6e-33 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G66470 70 / 3e-13 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 70 / 3e-13 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT2G24260 64 / 2e-11 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 64 / 4e-11 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 61 / 4e-10 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G09750 55 / 1e-08 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089000 [exp] 495 / 9e-177 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G017100 [exp] 188 / 3e-56 AT2G14760 179 / 2e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G119200 [exp] 186 / 6e-55 AT4G33880 186 / 3e-55 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.017G126800 [exp] 74 / 1e-14 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.004G088900 [exp] 71 / 1e-13 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.018G109500 [exp] 64 / 6e-11 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 64 / 7e-11 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 63 / 8e-11 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.013G041000 [exp] 59 / 1e-09 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001068 [exp] 144 / 1e-39 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 134 / 9e-36 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10017634 [exp] 70 / 3e-13 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10033592 [exp] 69 / 8e-13 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10021846 [exp] 63 / 8e-11 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10033488 [exp] 58 / 1e-09 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014726 [exp] 57 / 2e-09 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 58 / 3e-09 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 57 / 4e-09 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 57 / 1e-08 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G294300.2 pacid=42791725 polypeptide=Potri.001G294300.2.p locus=Potri.001G294300 ID=Potri.001G294300.2.v4.1 annot-version=v4.1 ATGGAGCCTATTGGAGCCACTGCGGAGGGAGAGTGGAGTTCTCTTAGTGGAATGTACACAAGTGAGGAGGCTGATTTCATGGAACAGTTGCTTGTCAACT GTCCTCCTAATCAGGTTGATTCAAGTTCAAGCTTTGGAGTTCCATCTAGTTTTTGGCCTAACCATGAATCAACAATGAACATGGAAGGGGCCAATGAATG TTTATTGTATTCTTTGGATATTGCTGATACTAATCTGTACCATTTTTCACAAGTGAGCAGTGGTTATAGTGGTGGTAGTAGCATTCTTTTTCCCAACTCA AGTGGAGAAAGCTACTACCTGAGTGATTCCCACCCAGTTTTGGCAAACACTAATAGTTCCATGTCAATGGATTTTTGCATGGGAGACTCGTATGTTGTTG ATGGCGATGACTTCTCAAACCAAGAATTGAGCAATGGAAATGTGGAAGAGTCTGGTGGAAACCAGACTGTAGCTGCTCTTCCTGAACCTGAAAGCAATTT GCAACCCAAGAGAGAATCAAAGATGCCAGCATCTGAACTACCCCTGGAAGATAAAAGCAGAAAGCCACCTGAGAATTCCAAGAAAAGATCACGACGTACG GGAGATGCCCAAAAGAACAAGAGGAATGTAAGGTCAAAGAAGAGCCAGAAGGTTGCCTCGACTGGCAACAATGATGAAGAAAGCAATGGTGGCCTTAATG GTCCTGTCTCAAGCGGTTGCTGCTCAGAGGATGAATCCAATGCCTCCCAGGAGCTCAATGGAGGAGCGAGTTCAAGTTTGAGCTCAAAAGGGACAACAAC TCTCAACTCAAGTGGCAAAACAAGAGCCAGTAAGGGGGCAGCCACTGATCCCCAGAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATAAATGAGAGGCTG AGAATTCTACAAAACCTTGTCCCCAATGGAACAAAGGTTGACATTAGCACAATGCTTGAAGAGGCTGTCCAGTATGTGAAGTTTTTGCAACTCCAAATTA AGCTGCTAAGCTCTGAAGACCTGTGGATGTATGCTCCTATCGCGTACAATGGTATGGACATCGGTCTTGATCATCTGAAGCTTACCACACCAAGACGATT GTAG
AA sequence Show only first row Show all	>Potri.001G294300.2 pacid=42791725 polypeptide=Potri.001G294300.2.p locus=Potri.001G294300 ID=Potri.001G294300.2.v4.1 annot-version=v4.1 MEPIGATAEGEWSSLSGMYTSEEADFMEQLLVNCPPNQVDSSSSFGVPSSFWPNHESTMNMEGANECLLYSLDIADTNLYHFSQVSSGYSGGSSILFPNS SGESYYLSDSHPVLANTNSSMSMDFCMGDSYVVDGDDFSNQELSNGNVEESGGNQTVAALPEPESNLQPKRESKMPASELPLEDKSRKPPENSKKRSRRT GDAQKNKRNVRSKKSQKVASTGNNDEESNGGLNGPVSSGCCSEDESNASQELNGGASSSLSSKGTTTLNSSGKTRASKGAATDPQSLYARKRRERINERL RILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDLWMYAPIAYNGMDIGLDHLKLTTPRRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Potri.001G294300 [exp]	0	1
AT1G30870			Peroxidase superfamily protein...		Potri.003G156100 [exp]	2.44	0.8654
AT1G06225		CLE3	CLAVATA3/ESR-RELATED 3 (.1)		Potri.019G091100 [exp]	3.16	0.8941	CLE3.1
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.011G063700 [exp]	11.31	0.8122
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Potri.004G171500 [exp]	12.68	0.6353
					Potri.014G042550 [exp]	15.81	0.7045
AT2G17070			Arabidopsis protein of unknown...		Potri.004G182400 [exp]	16.37	0.6514
AT1G68630			PLAC8 family protein (.1)		Potri.010G127800 [exp]	20.09	0.8332
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Potri.002G063800 [exp]	21.00	0.7978
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.019G090800 [exp]	24.81	0.8149	CLE4.1
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	27.92	0.8264

Compare expression of checked genes

Potri.001G294300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.