Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14740 1101 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 1097 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT3G52850 932 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 912 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT1G30900 817 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 806 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 741 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT1G63690 43 / 0.0005 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G21230 43 / 0.0006 WAK5 wall associated kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G088900 [exp] 1192 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.006G108800 [exp] 965 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.016G137300 [exp] 962 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155200 [exp] 820 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 802 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 210 / 5e-65 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 69 / 7e-14 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.019G082500 [exp] 51 / 2e-06 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.003G185800 [exp] 43 / 0.0006 AT1G16260 530 / 7e-180 Wall-associated kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020967 [exp] 1135 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10012366 [exp] 1109 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10002130 [exp] 1070 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10022737 [exp] 935 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 921 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025136 [exp] 909 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10006944 [exp] 798 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10025220 [exp] 713 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025361 [exp] 466 / 1e-159 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10013383 [exp] 48 / 3e-05 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0001 [poplar] [flax] EGF PF12662 [poplar] [flax] cEGF Complement Clr-like EGF-like
Representative CDS sequence Show only first row Show all	>Potri.001G294400.1 pacid=42789010 polypeptide=Potri.001G294400.1.p locus=Potri.001G294400 ID=Potri.001G294400.1.v4.1 annot-version=v4.1 ATGGCGCTAAAGAGATCGTCTTTGAATCTCTTTTTAGGGTTTTTGGTGATTTCTTTGATAGCACCAAGATCTATAGCTAGATTTGTTGTTGAAAAAAACA GTTTGAGGGTTACATCACCAGATAAAATAAAGGGTACTTATGATAGTGCAATTGGGAATTTTGGGATACCCCAATATGGAGGTAGTATGGCAGGTGCTGT TGTGTATCCAAAAGATAATAAAAAGGGTTGCAAAGAGTTTGATGGATTTGGGATTTCGTTTCAGTCGAAGCCTGGTGCTTTACCCACTTTTGTCTTGGTG GATCGTGGAGATTGCTTCTTCGCTTTGAAGGTCTGGAATGCCCAGAAGGCTGGGGCTTCTGCAGTTCTTGTTGCAGATGACATGGAGGAACCATTAATAA CCATGGACACACCTGCAGAGGACGCTTCATCTGCACAATACATTGAGAACATAACAATACCTTCTGCTCTTATCGAGAAAAGCTTTAGTGAAACGTTAAA GAAGGCACTTAGCAATGGGGATATGGTAAATGTGAATCTTGATTGGAGAGAAGCTGTTCCGCACCCAGATGATCGTGTGGAGTATGAGCTATGGACCAAC AGCAATGATGAATGTGGGGTTAAGTGTGACATGTTGATGGAATTTGTGAAGGACTTTAGGGGTGCAGCACAGATACTTGAGAAAGGTGGTTACACTCAGT TTACACCCCATTACATTACTTGGTATTGCCCACAAGCATTCACCTTGAGCAGGCAGTGCAAGTCTCAGTGTATAAATCATGGAAGATATTGTGCTCCTGA TCCTGAACAAGACTTTAGCTCAGGTTATGATGGGAAAGATGTTGTTCTTGAAAATTTAAGACAACTATGTGTTTTTAAAGTGGCAAATGAGACCAAAAAA CCTTGGGTGTGGTGGGATTACGTGACTGATTTTCAAATTAGATGTCCCATGAAGGAGAAGAAGTACAACAAAGAATGTGCTGATGCTGTAATCAAATCTC TTGGGCTCGATGGTAAAAAGATTGATAAGTGTATGGGAGACCCAAAAGCTAACTCTGACAACCCAGTTTTGAAAGAAGAGCAAGATGCCCAGGTTGGAAA AGGAACAAGGGGTGATGTAACCATTTTGCCCACCCTTGTTGTCAACAATCGTCAATATCGAGGAAAGTTGGAGAAAGGTGCTGTTCTAAAGGCTCTATGC TCTGGTTTCGAGGAAACAACAGAGCCTGCTGTTTGTTTGAGTGGTGATGTGGAGACAAATGAGTGCTTGGACAATAACGGGGGTTGCTGGCAAGATAAAA TAGCCAACATTACAGCCTGCAGGGACACGTTTCGTGGGAGAGTATGTGAGTGTCCTCTTGTTGATGGCGTGCAGTTCAAAGGTGATGGTTACAAGAACTG TGAAGTGAGTGGATCTGGGAGGTGCAAAATTAACAATGGGGGCTGTTGGCATGAATCCCAGGACGGACATACCTTCTCTGCTTGTTTGGATGTTGATGGT GGTAAATGCCAGTGTCCTCCAGGATTTAAAGGTGATGGTGTGAAAAGTTGTTTAGATGTTGATGAGTGCAAAGAGAGAAAAGCCTGTCAGTGCCCTGCAT GTAGTTGTAAAGATACTTGGGGAAGCTATGAATGCTCTTGTAGTGGGGATCTTCTTTATATGAGAGACCATGATACCTGCATAAGTAAGAGCGGCACTGA AGTGAAATCAGCATGGACTGTGGTTTGGGTCATATTTATAGGCCTGGCGATGGCTGCTGGTGGAGGATATCTTGTCTACAAACATAAATTGAGGTCATAC ATGGACTCAGAGATAAGAGCTATCATGGCACAGTACATGCCTCTGGACAGTCAAGCAGAAGTTCCAAACCATGTCCATGAGGAGCGGGCATGA
AA sequence Show only first row Show all	>Potri.001G294400.1 pacid=42789010 polypeptide=Potri.001G294400.1.p locus=Potri.001G294400 ID=Potri.001G294400.1.v4.1 annot-version=v4.1 MALKRSSLNLFLGFLVISLIAPRSIARFVVEKNSLRVTSPDKIKGTYDSAIGNFGIPQYGGSMAGAVVYPKDNKKGCKEFDGFGISFQSKPGALPTFVLV DRGDCFFALKVWNAQKAGASAVLVADDMEEPLITMDTPAEDASSAQYIENITIPSALIEKSFSETLKKALSNGDMVNVNLDWREAVPHPDDRVEYELWTN SNDECGVKCDMLMEFVKDFRGAAQILEKGGYTQFTPHYITWYCPQAFTLSRQCKSQCINHGRYCAPDPEQDFSSGYDGKDVVLENLRQLCVFKVANETKK PWVWWDYVTDFQIRCPMKEKKYNKECADAVIKSLGLDGKKIDKCMGDPKANSDNPVLKEEQDAQVGKGTRGDVTILPTLVVNNRQYRGKLEKGAVLKALC SGFEETTEPAVCLSGDVETNECLDNNGGCWQDKIANITACRDTFRGRVCECPLVDGVQFKGDGYKNCEVSGSGRCKINNGGCWHESQDGHTFSACLDVDG GKCQCPPGFKGDGVKSCLDVDECKERKACQCPACSCKDTWGSYECSCSGDLLYMRDHDTCISKSGTEVKSAWTVVWVIFIGLAMAAGGGYLVYKHKLRSY MDSEIRAIMAQYMPLDSQAEVPNHVHEERA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.001G294400 [exp]	0	1
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	18.16	0.7805
AT5G18230			transcription regulator NOT2/N...		Potri.013G059800 [exp]	19.89	0.7838
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.014G196200 [exp]	35.66	0.7787
AT1G65720			unknown protein		Potri.017G142100 [exp]	48.66	0.7615
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.010G247900 [exp]	50.19	0.7620
AT4G27120			unknown protein		Potri.001G418900 [exp]	54.79	0.7704
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.008G214100 [exp]	61.50	0.7288
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.011G000900 [exp]	63.24	0.7752
AT2G18670			RING/U-box superfamily protein...		Potri.018G098100 [exp]	74.99	0.7172
AT1G29690		CAD1	constitutively activated cell ...		Potri.016G135100 [exp]	78.10	0.7280

Compare expression of checked genes

Potri.001G294400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.