Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19620 1079 / 0 Glycosyl hydrolase family protein (.1) AT5G64570 811 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT1G02640 783 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G09730 781 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G49360 777 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT1G78060 712 / 0 Glycosyl hydrolase family protein (.1) AT5G10560 704 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 439 / 7e-146 Glycosyl hydrolase family protein (.1) AT3G47000 132 / 4e-32 Glycosyl hydrolase family protein (.1) AT3G47010 127 / 2e-30 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206800 [exp] 838 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.002G197200 [exp] 832 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 830 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 810 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.003G022900 [exp] 807 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.008G108100 [exp] 786 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.002G094000 [exp] 753 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 739 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 739 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020966 [exp] 816 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10010015 [exp] 814 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10019099 [exp] 759 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10022374 [exp] 741 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 695 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10016858 [exp] 677 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10007775 [exp] 476 / 2e-160 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 244 / 9e-72 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 155 / 1e-43 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10005871 [exp] 133 / 3e-32 AT3G47000 908 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain CL0159 [poplar] [flax] E-set PF14310 [poplar] [flax] Fn3-like Fibronectin type III-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G294700.1 pacid=42792551 polypeptide=Potri.001G294700.1.p locus=Potri.001G294700 ID=Potri.001G294700.1.v4.1 annot-version=v4.1 ATGAAAATCCAACTTTTCCTAGCACTTCTTCTCTCGTCGCTCCTAATAGTCCCTTGTTTCGCTCAGAATTTTGCTTGTGACAAGAACATTCCTGAAACGA GTCAGTTTCCCTTCTGTAACACATCCCTATCATATGAGAACAGAGCCAAGGATCTTATCTCGCGCTTGACGTTACAAGAAAAGGCGCAACAACTAGGAAA TCATGCTGCTGGGATTTCCCGTCTAGGCGTCCCTGCTTACGAGTGGTGGTCTGAGGCACTTCATGGCGTGGCAAGTGTCGGTTATGGTGTACATTTTAAT GCTACAGTACCAGGTGCCACTAGCTTCCCAGCTGTGATTTTGTCCGCTGCTAGTTTTAATACAACATTATGGTTTAAGATGGGACAAGTGGTGTCAACTG AGGCCCGGGCCATGTATAATGTCGGTTTAGCCGGGTTAACATATTGGAGCCCCACCATTAATGTGTTTCGAGACCCAAGGTGGGGCCGGGGCCAAGAGAC ACCAGGGGAGGATCCTCTGGTGGTGTCAAAATATGCTGTGAATTATGTTAGGGGCTTGCAAGAAGTTGGCGAGGAAGGAAATTCCACTGGTAATAGACTT AAGGTATCAAGTTGTTGCAAGCATTATACTGCATATGACATTGACAAATGGAAAGGTGTCGATCGATTTCACTTTGATGCCAAGGTGACAAAGCAGGACC TAGAGGACACATTTCAACCGCCATTTAAGAGCTGTGTGGAGGAGGGTCGTGTGAGTAGTGTGATGTGTTCATATAACAGGGTTAATGGCATTCCTACTTG TGCTGATCCAGACCTGCTTAAAGGGGTTATCAGAGAACAATGGAATCTTGACGGATATATTGTATCAGATTGTGATTCCATTGAGGTTTATTATGACAGA ATCAAATATGCAGCCACACCTGAAGATGCAGTAACCCTGGCCTTAAAAGCAGGTTTAAACATGAACTGCGGAGATTTTTTGCCGAGGTATACAGAAAATG CAGTCAAGTTAAACAAAATTGAAGAATCTATTGTAGACCAAGCCTTAATCTACAATTATATAGTCCTAATGAGACTTGGTTTCTTTGACGGGGACCCAAA ATTGCACCCATTTGGAAATCTTGGACCATCAGATGTATGTACTGAAGAACATCAAGAGCTAGCGCTTGATGCTGCAAAGCAAGGGATAGTCTTGCTAGAC AATAAGGGAGCTCTTCCTTTGTCTAAAAACGCCACAAAAAACTTGGCTGTTATAGGACCAAATGGTAATGCTACCGTGGCTATGATAAGCATCTATGCTG GTATACCTTGTGAATACACTACGCCTTTACAAGGACTGCAGAAATACATCTCATCTGTCACCTATGCAGCCGGGTGTCCATTCGTGAATTGCACTGATGA ATCGCTTGCCGGGCCAGCAACTAAGGCTGCTGCTACAGCAGATGTGGTGGTGTTGGTGATGGGGCTTGATCAATCTATAGAGCAAGAGGACTTGGATAGG GAGAACCTGATATTGCCAGGATATCAAGAAAAACTTGTGAAGGATGTGGCTAATGCTACAAATGGAACAATGATTCTTGTTATAATGTCTGCTAGTCCTG TCGATATCTCTTTTGCCAAGAATGAGAGCAAGGTTGGAGGGATTTTGTGGGTTGGCTACCCTGGTCAAGCTGGAGGAGATGCCATAGCTCAGGTCATATT TGGAGACCACAATCCTGCCGGGAGGTCTCCTTTTACATGGTATCCAAAAGAGTACTCCGATCAAGTGCCAATGACAAACATGAACCTAAGAGCCAATGCA ACTGATAACTTCCCTGGAAGAACCTACAGGTTCTACACTGGAAAACCTTTATATGAGTTTGGCCATGGACTAAGCTACTCAACTTTCTCCAAGTTTGTTA TTTCTGCTCCTTCTACCTTACTAGTTCCATTGAAATCTTCTCTTAATCCAAGTGGCATTCCCTCTGTTTATTCCTCCAAACAAGACCCTTATCCTAATGG CCAAGCCATTGATGTTTCTAGTGTAAACTGCACCAATTTGCAACATGTTCTAGTCATTGGTGTGAGAAACAATGGGCCAATGAATGGAGATCATGTGGTG CTAATATTTTGGAAGCCACCTAAATCAGCAGAGATAACAGGTCCACCAAATATGCAACTGGCTGCATTTGACAGGGTGCATGTGAAAAAGGGCAACACAA ATAATATAACCTTGGCTGTGGATGTGTGCAAGGGACTAAGTCTTGTGGATAGCGAAGGACAGAGGAAGCTGGTAACAGGACAACATACATTTATAATTGG ATCTTCGAGTGAGCATCAAGTGAGGTACCATCTCATCGTTAGGCTGGCTCAAAATGGACGCATGGGAGGATTCACATTTATGTAA
AA sequence Show only first row Show all	>Potri.001G294700.1 pacid=42792551 polypeptide=Potri.001G294700.1.p locus=Potri.001G294700 ID=Potri.001G294700.1.v4.1 annot-version=v4.1 MKIQLFLALLLSSLLIVPCFAQNFACDKNIPETSQFPFCNTSLSYENRAKDLISRLTLQEKAQQLGNHAAGISRLGVPAYEWWSEALHGVASVGYGVHFN ATVPGATSFPAVILSAASFNTTLWFKMGQVVSTEARAMYNVGLAGLTYWSPTINVFRDPRWGRGQETPGEDPLVVSKYAVNYVRGLQEVGEEGNSTGNRL KVSSCCKHYTAYDIDKWKGVDRFHFDAKVTKQDLEDTFQPPFKSCVEEGRVSSVMCSYNRVNGIPTCADPDLLKGVIREQWNLDGYIVSDCDSIEVYYDR IKYAATPEDAVTLALKAGLNMNCGDFLPRYTENAVKLNKIEESIVDQALIYNYIVLMRLGFFDGDPKLHPFGNLGPSDVCTEEHQELALDAAKQGIVLLD NKGALPLSKNATKNLAVIGPNGNATVAMISIYAGIPCEYTTPLQGLQKYISSVTYAAGCPFVNCTDESLAGPATKAAATADVVVLVMGLDQSIEQEDLDR ENLILPGYQEKLVKDVANATNGTMILVIMSASPVDISFAKNESKVGGILWVGYPGQAGGDAIAQVIFGDHNPAGRSPFTWYPKEYSDQVPMTNMNLRANA TDNFPGRTYRFYTGKPLYEFGHGLSYSTFSKFVISAPSTLLVPLKSSLNPSGIPSVYSSKQDPYPNGQAIDVSSVNCTNLQHVLVIGVRNNGPMNGDHVV LIFWKPPKSAEITGPPNMQLAAFDRVHVKKGNTNNITLAVDVCKGLSLVDSEGQRKLVTGQHTFIIGSSSEHQVRYHLIVRLAQNGRMGGFTFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G294700 [exp]	0	1
AT3G03210			unknown protein		Potri.004G080600 [exp]	2.44	0.8539
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.014G040700 [exp]	2.82	0.8495
AT3G26020			Protein phosphatase 2A regulat...		Potri.004G177900 [exp]	3.46	0.8534
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.015G071001 [exp]	3.87	0.8332
					Potri.004G047566 [exp]	4.00	0.7885
					Potri.003G223700 [exp]	4.24	0.8526
					Potri.014G175050 [exp]	6.32	0.8229
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Potri.010G062520 [exp]	6.48	0.7817
					Potri.002G200150 [exp]	7.93	0.8237
AT5G53592			FBD-like domain family protein...		Potri.001G401850 [exp]	8.77	0.8124

Compare expression of checked genes

Potri.001G294700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.