Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19630 578 / 0 Radical SAM superfamily protein (.1) AT2G39670 181 / 5e-53 Radical SAM superfamily protein (.1.2) AT1G60230 175 / 3e-50 Radical SAM superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056500 [exp] 184 / 2e-54 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.010G040700 [exp] 183 / 2e-53 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.010G203300 [exp] 67 / 4e-12 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2) Potri.019G012483 [exp] 56 / 5e-09 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020989 [exp] 627 / 0 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10005409 [exp] 607 / 0 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1) Lus10002698 [exp] 191 / 9e-57 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10000953 [exp] 192 / 7e-55 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10013005 [exp] 150 / 7e-41 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10029159 [exp] 103 / 5e-24 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000081 [exp] 89 / 1e-20 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF04055 [poplar] [flax] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G294900.1 pacid=42789001 polypeptide=Potri.001G294900.1.p locus=Potri.001G294900 ID=Potri.001G294900.1.v4.1 annot-version=v4.1 ATGGGCGTTGGATCGATTTTCGACGGTCCTGATGTAAGGGCAGAGTTTGAGAAAGCAGGCATCAACACTCACTTCATTCCCTTTATTTGGAAGTATGTGA TTAAGAACCCTAATTGTGAATGGGATGATATACCCGATTTACCCTCAGCTGCATACTCACTTTTGCGTTCCAAGTTCAAAACTTCTACTTCAAGTGTTGA CTCTGTTATTAACTCTAATGATGGGGTCACCACCAAACTCCTCGTTAAGCTTCAGAATGGAGCATTTGTGGAGGCGGTGATTATGAGGTATGACACCCGG TTGGGGAAATATTGTGGGAAACCCCGTCCTGGTGGTCCAAGATCGACTTTGTGCATATCATCTCAGGTTGGATGTAAGATGGGTTGCAAATTTTGTGCAA CTGGAAGTATGGGATTCAAAAACAATCTGTCGTCGGGAGAAATTGTCGAGCAATTAGTTCATGCCTCTTGTTTATCACAAATACGGAATGTTGTTTTCAT GGGCATGGGGGAACCACTGAATAACTACTCTGCCTTGGTGGAAGCAGTACGTGCTATGTCAGGAGTTCCGTTTCAGCTATCTCCAAAGAGAATAACTGTA TCAACAGTTGGAATAATTCACGCTATCAACAAGCTTCATAAAGATTTACCTGGATTGAACCTGGCAGTGTCCCTACATGCACCAGTTCAAGATGTTCGCT GTCAGATAATGCCTGCAGCTCGGGCTTTCCCTTTGGAAAAACTCATGGATGCTCTGCAAGTATATCAAAAGAACAGTATGCAGAAGATTTTTATTGAGTA TATAATGCTTGATGGGGTGAATGATGAAGAGCAGCATGCCCACCAGCTAGGCAAATTGCTTGAGACATTTGATGTGGTCGTGAATTTGATACCTTTCAAT CCAATTGGTAGTCTGAGTCAATTCAGAACTAGTAGCGAAGAGAAAGTGTTGAGATTCCAGAAAATTCTTAGAGGTGTAAATAACATTCGGACAACAGTTC GTAAGCAAATGGGTCAGGATATAAGTGGTGCTTGTGGTCAGCTGGTGGTCAACTTGCCTGATGAGAAGAAGCCTCCAAATTTGGGTGTAACTGATATTGA AGACCTTGTTTCACGCAGATGA
AA sequence Show only first row Show all	>Potri.001G294900.1 pacid=42789001 polypeptide=Potri.001G294900.1.p locus=Potri.001G294900 ID=Potri.001G294900.1.v4.1 annot-version=v4.1 MGVGSIFDGPDVRAEFEKAGINTHFIPFIWKYVIKNPNCEWDDIPDLPSAAYSLLRSKFKTSTSSVDSVINSNDGVTTKLLVKLQNGAFVEAVIMRYDTR LGKYCGKPRPGGPRSTLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASCLSQIRNVVFMGMGEPLNNYSALVEAVRAMSGVPFQLSPKRITV STVGIIHAINKLHKDLPGLNLAVSLHAPVQDVRCQIMPAARAFPLEKLMDALQVYQKNSMQKIFIEYIMLDGVNDEEQHAHQLGKLLETFDVVVNLIPFN PIGSLSQFRTSSEEKVLRFQKILRGVNNIRTTVRKQMGQDISGACGQLVVNLPDEKKPPNLGVTDIEDLVSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19630			Radical SAM superfamily protei...		Potri.001G294900 [exp]	0	1
AT2G46390		SDH8	succinate dehydrogenase 8, unk...		Potri.014G095901 [exp]	5.47	0.6941
AT1G73940			unknown protein		Potri.001G453400 [exp]	9.79	0.6908
AT2G35795			Chaperone DnaJ-domain superfam...		Potri.006G131200 [exp]	15.00	0.6818
AT5G64130			cAMP-regulated phosphoprotein ...		Potri.004G111900 [exp]	20.00	0.6433
AT4G17010			unknown protein		Potri.012G038600 [exp]	22.71	0.6378
AT1G76860			Small nuclear ribonucleoprotei...		Potri.005G191600 [exp]	22.97	0.6570
					Potri.001G340100 [exp]	24.49	0.6720
AT5G41685			Mitochondrial outer membrane t...		Potri.006G077500 [exp]	33.77	0.6556	Pt-TOM7.2
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.006G252000 [exp]	39.79	0.6404
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.001G280600 [exp]	41.01	0.5660	Pt-ATUBA1.5

Compare expression of checked genes

Potri.001G294900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.