Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19590 594 / 0 BUB3.1 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G49910 593 / 0 BUB3.2 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.2, Transducin/WD40 repeat-like superfamily protein (.1) AT1G69400 219 / 2e-69 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G80670 207 / 2e-64 RAE1 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15850 64 / 2e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 55 / 3e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 49 / 3e-06 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 48 / 4e-06 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 47 / 8e-06 MAC3B MOS4-associated complex 3B (.1.2.3) AT5G64730 47 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089200 [exp] 652 / 0 AT3G19590 602 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G162700 [exp] 224 / 7e-71 AT1G69400 350 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G092100 [exp] 211 / 6e-66 AT1G69400 333 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G180000 [exp] 186 / 7e-56 AT1G80670 590 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G048100 [exp] 182 / 1e-54 AT1G80670 583 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 62 / 1e-10 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 56 / 1e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 46 / 2e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G470900 [exp] 45 / 4e-05 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003954 [exp] 639 / 0 AT3G19590 618 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023814 [exp] 632 / 0 AT3G19590 610 / 0.0 BUB \(BUDDING UNINHIBITED BY BENZYMIDAZOL\) 3.1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014343 [exp] 212 / 5e-66 AT1G69400 313 / 6e-106 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026051 [exp] 210 / 8e-66 AT1G69400 318 / 9e-109 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026095 [exp] 207 / 6e-64 AT1G80670 632 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002323 [exp] 204 / 1e-62 AT1G80670 608 / 0.0 RNA export factor 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033710 [exp] 58 / 5e-09 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10031629 [exp] 53 / 2e-07 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 52 / 2e-07 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 52 / 4e-07 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G295100.1 pacid=42789524 polypeptide=Potri.001G295100.1.p locus=Potri.001G295100 ID=Potri.001G295100.1.v4.1 annot-version=v4.1 ATGACAGCTGTCATCCCGCCACCGTTCTCCGGCCGCGAACTCTCGAATCCACCAACAGACGGTATCTCGAACCTTCGATTCTCCAATCACAGCGATCTCC TACTCGTCTCCTCGTGGGACAAGACTGTGAGATTATACGACGCCAGTGCTAATGCTTTGAGAGGAGAGTTTTTGCACGGTGGTGCCGTGCTTGATTGCTG CTTCCACGACGATTCCTCTGGGTTCAGTGCCAGCGGGGACAATACCGTGCGACGGTTGGTTTTTAACCATGGAAAGGAGGATATTCTGGGAAGGCACGAT GCACCTGTTCGCTGCATCGAGTACTCTTATGCAGCAGGGCAAGTAATCACTGGTAGCTGGGACAAAACACTGAAGTGCTGGGATCCCAGAGGAGCTAGTG GGCAAGAGCGCACTCTTGTTGGCACATATCCACAACCTGAGCGTGTTTACTCCCTGTCTCTTGTTGGAAATCGTTTAGTTGTAGCTACTGCAGGAAGACA TGTTAATGTCTATGATCTGCGAAATATGTCTCTACCTGAGCAAAGGAGAGAATCCTCTCTGAAATATCAAACTCGATGTGTGCGGTGCTATCCCAATGGC ACAGGATATGCTCTCAGTTCTGTTGAAGGACGAGTTGCAATGGAATTTTTTGATCCTTCAGAGGCCAGTCAAGCAAAAAAATATGCTTTCAAGTGTCATC GAAAATCTGAGGCTGGAAGGGACATTGTCTATCCTGTAAATGCCATTGCTTTTCATCCTGTCTATGGTACATTTGCAACTGGAGGTTGTGATGGTTTTGT GAACGTATGGGATGGGAACAACAAAAAGAGACTATATCAGTACTCAAAGTATCCATCGAGTGTCGCCGCACTTTCATTTAGCAGAGATGGTCGTCTGTTG GCTGTGGCATCAAGTTACACTTATGAAGAGGGAGATAAACCCCATGAGCCAGATGCTATCTTTGTACGAAGTGTAAATGAAATAGAAGTGAAGCCAAAGC CGAAAGCTTACCCCAACCCCCCAGCATAA
AA sequence Show only first row Show all	>Potri.001G295100.1 pacid=42789524 polypeptide=Potri.001G295100.1.p locus=Potri.001G295100 ID=Potri.001G295100.1.v4.1 annot-version=v4.1 MTAVIPPPFSGRELSNPPTDGISNLRFSNHSDLLLVSSWDKTVRLYDASANALRGEFLHGGAVLDCCFHDDSSGFSASGDNTVRRLVFNHGKEDILGRHD APVRCIEYSYAAGQVITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSLPEQRRESSLKYQTRCVRCYPNG TGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPVYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSVAALSFSRDGRLL AVASSYTYEEGDKPHEPDAIFVRSVNEIEVKPKPKAYPNPPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.001G295100 [exp]	0	1
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.014G043600 [exp]	3.46	0.6731	Pt-ADL4.1
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.007G023500 [exp]	10.86	0.7059
AT1G11320			unknown protein		Potri.005G242900 [exp]	12.72	0.7204
AT1G63660			GMP synthase (glutamine-hydrol...		Potri.003G128200 [exp]	23.23	0.6802
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	25.49	0.6579	Pt-RPL3.3
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	42.08	0.6406
AT1G29220			transcriptional regulator fami...		Potri.011G068100 [exp]	47.74	0.6278
AT3G08943			ARM repeat superfamily protein...		Potri.016G123600 [exp]	48.90	0.6176
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Potri.014G096400 [exp]	49.85	0.5664	Pt-HTR12.1,HTR904
AT5G27660			Trypsin family protein with PD...		Potri.013G018300 [exp]	63.16	0.6108

Compare expression of checked genes

Potri.001G295100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.