Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40160 318 / 3e-108 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G66055 167 / 3e-48 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT4G27780 73 / 2e-14 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 70 / 2e-13 ACBP1 acyl-CoA binding protein 1 (.1) AT2G03430 66 / 3e-12 Ankyrin repeat family protein (.1) AT2G25600 63 / 8e-11 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT3G09890 60 / 2e-10 Ankyrin repeat family protein (.1.2) AT2G14255 61 / 3e-10 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G13300 60 / 1e-09 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT5G20350 59 / 2e-09 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G105800 [exp] 169 / 5e-49 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.007G060400 [exp] 158 / 6e-45 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.010G185200 [exp] 74 / 3e-14 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 70 / 3e-13 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.015G010200 [exp] 67 / 2e-12 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.010G161300 [exp] 66 / 2e-12 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.012G017700 [exp] 67 / 3e-12 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.013G062000 [exp] 67 / 3e-12 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.001G130500 [exp] 65 / 6e-12 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014522 [exp] 303 / 6e-102 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 275 / 4e-91 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10041853 [exp] 172 / 1e-49 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10028399 [exp] 114 / 4e-28 AT5G66055 398 / 3e-135 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10021508 [exp] 69 / 1e-13 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10003748 [exp] 68 / 2e-12 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10023911 [exp] 66 / 2e-12 AT3G09890 219 / 6e-73 Ankyrin repeat family protein (.1.2) Lus10022382 [exp] 67 / 3e-12 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10022609 [exp] 64 / 4e-12 AT3G09890 181 / 1e-58 Ankyrin repeat family protein (.1.2) Lus10005910 [exp] 66 / 9e-12 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.001G295200.1 pacid=42791525 polypeptide=Potri.001G295200.1.p locus=Potri.001G295200 ID=Potri.001G295200.1.v4.1 annot-version=v4.1 ATGGCGTTCGCCGGAGTTACAGTGACTTGTCATTCCAGTTATCTACTCCCTCGATTCTCTTCTTTCAACTATTCTTCTATTCCCCTTTTAAGTTTAGGAA GATTCCCATTATTTATTTCTAAGGAATGCTTAAGAGTTAGTGCTTATGCGGCCGGGTCAAAACGGGCATCATCACCATCATATCTGGAGACAAAACACGG AGTTTGGGAAGATCCTGATGATGGAAGCGGCAGTGATTATGACCAAGAAGATGAAGAAGAAGCGAAAGAAAATGACTTGGATTTTGATAGTAATTGGGAG GAAGAAAAGAATTCTGTCACAGCTACTTCCACTGTCACTAACTCCACTACAGAAAATAACTACGGGGAGGATCTTGTCAAAGAGGTTGAACAACTTTTGG GACCAGAAGAGAGAGCAATTTTCCAACAGAATGCATCTCCTAATCTCCGCAAAATATCAACTGCAAAATGGAATCCACTCCAGACCCTTGCTCTATCAGG ACAGATAAAATTTATGGACAAGTTGCTTGATGATGGATTAGATATTGATGACCAGGATAATGATGGGTTCACGGCATTGCATAAGGCAATTATTGGCAAA AAGGAGGCTGTTATTAGTCATCTTTTAAGAAAAGGTGCTAGTCCACATATCAGAGATCGGGATGGTGCTAGCCCACTGCATTATGCAGTTCAAGTTGGTG CAATGCAAACTGTAAAGTTGCTGATAAAATACGAGGTTGATGTCAATGCTGCGGATAATGAAGGATGGACTCCATTGCACATTGCAGTCCAAAGCAGAAA TAGAGATATAGCTAAAGTTTTGTTGGTCAATGGTGCAGATAAGACCAGAAGAACTAAGGATGGAATGACACCCCTGGATCTTAGCTTATGCTTTGGCAAA GACTTTAAGTCATTTGATATTGCGAAGTTACTGAAGGTTTTACCAGCTAACAGGGAATTATAA
AA sequence Show only first row Show all	>Potri.001G295200.1 pacid=42791525 polypeptide=Potri.001G295200.1.p locus=Potri.001G295200 ID=Potri.001G295200.1.v4.1 annot-version=v4.1 MAFAGVTVTCHSSYLLPRFSSFNYSSIPLLSLGRFPLFISKECLRVSAYAAGSKRASSPSYLETKHGVWEDPDDGSGSDYDQEDEEEAKENDLDFDSNWE EEKNSVTATSTVTNSTTENNYGEDLVKEVEQLLGPEERAIFQQNASPNLRKISTAKWNPLQTLALSGQIKFMDKLLDDGLDIDDQDNDGFTALHKAIIGK KEAVISHLLRKGASPHIRDRDGASPLHYAVQVGAMQTVKLLIKYEVDVNAADNEGWTPLHIAVQSRNRDIAKVLLVNGADKTRRTKDGMTPLDLSLCFGK DFKSFDIAKLLKVLPANREL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	0	1
					Potri.001G033500 [exp]	2.00	0.9411
AT5G12040			Nitrilase/cyanide hydratase an...		Potri.006G222900 [exp]	2.44	0.9297
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	4.24	0.9204
AT4G33760			tRNA synthetase class II (D, K...		Potri.001G289001 [exp]	10.67	0.9095
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Potri.002G053900 [exp]	11.31	0.8986
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	12.40	0.9223
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G087000 [exp]	14.07	0.9051
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Potri.008G205400 [exp]	14.62	0.8721
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Potri.009G116200 [exp]	16.61	0.9229
AT4G29750			CRS1 / YhbY (CRM) domain-conta...		Potri.006G148901 [exp]	16.70	0.9289

Compare expression of checked genes

Potri.001G295200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.