Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27730 144 / 9e-43 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G04340 119 / 6e-33 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT3G19580 120 / 8e-33 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT5G43170 104 / 1e-27 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT5G67450 98 / 1e-24 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT3G49930 96 / 4e-24 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G49900 81 / 4e-17 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT2G17180 72 / 6e-15 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT5G56200 73 / 1e-14 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT2G28200 72 / 1e-14 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089400 [exp] 238 / 3e-79 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.014G017300 [exp] 149 / 2e-44 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G119300 [exp] 148 / 5e-44 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.002G143800 [exp] 69 / 1e-13 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 67 / 7e-13 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.004G216900 [exp] 66 / 2e-12 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.004G118100 [exp] 64 / 1e-11 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G235800 [exp] 61 / 3e-11 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G051200 [exp] 61 / 3e-11 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033798 [exp] 150 / 1e-44 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10014631 [exp] 150 / 3e-44 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10032848 [exp] 127 / 2e-35 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10004316 [exp] 117 / 1e-31 AT5G04340 134 / 3e-38 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) Lus10018696 [exp] 79 / 6e-18 AT3G49930 130 / 6e-38 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10028173 [exp] 74 / 4e-15 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 70 / 1e-13 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10022610 [exp] 67 / 2e-13 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10009278 [exp] 63 / 1e-11 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10024428 [exp] 62 / 1e-11 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G295500.1 pacid=42792029 polypeptide=Potri.001G295500.1.p locus=Potri.001G295500 ID=Potri.001G295500.1.v4.1 annot-version=v4.1 ATGGCTCTTGAAGCTCTGAACTCTCCTACAACAGCCGCTCCTTTCAATTATGAAGAAACATGGATTAAAAGGAAACGCTCTAAGAGACCACGTAGTGAGT CCCCTTCGACCGAGGAAGAATACCTCGCTCTTTGCCTTATCATGCTTGCTCGTGGCGGCTCCCCTGCACCACCCCAACCACCAACTTTGGATCTTTCTTA CAAGTGTACGGTTTGCAACAAAGCTTTCTCTTCTTACCAGGCTCTTGGCGGGCACAAAGCCAGTCACAGGAAATCCTCCTCCGAGTCCACCGTCGCCACA GCCGCCGAAAACCCATCAACCTCCACCACAACTAACACAACCACCACGACCACCAATGGTAGGACTCATGAGTGCTCTATCTGCCACAAGACTTTCCTAA CTGGACAGGCCTTAGGCGGACACAAACGTTGTCACTATGAAGGCACAATTGGAGGCAACAACAGCAGTAGTGCTAGCGCTGCAATCACCACCTCAGACGG TGGTGCTGTTGGAGGCGGTGGCGTGATCCAGAGTAAAAGTCAAAGAAGCGGTGGTGGGTTTGACTTTGACCTGAACTTGCCTGCTTTGCCTGAATTTGAA GGTCCAAGAATCAGTCTACAAGCACTCTGCGGTGATCAAGAAGTGGAAAGTCCTTTGCCAGGGAAAAAGCCAAGATTAATGTTTTCGCTTAAGCAAGAAA AGACCGATATGGGTTCTTCGTAA
AA sequence Show only first row Show all	>Potri.001G295500.1 pacid=42792029 polypeptide=Potri.001G295500.1.p locus=Potri.001G295500 ID=Potri.001G295500.1.v4.1 annot-version=v4.1 MALEALNSPTTAAPFNYEETWIKRKRSKRPRSESPSTEEEYLALCLIMLARGGSPAPPQPPTLDLSYKCTVCNKAFSSYQALGGHKASHRKSSSESTVAT AAENPSTSTTTNTTTTTTNGRTHECSICHKTFLTGQALGGHKRCHYEGTIGGNNSSSASAAITTSDGGAVGGGGVIQSKSQRSGGGFDFDLNLPALPEFE GPRISLQALCGDQEVESPLPGKKPRLMFSLKQEKTDMGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.001G295500 [exp]	0	1
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	2.82	0.9327	ERF6
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G070500 [exp]	4.89	0.9212
AT5G01750			Protein of unknown function (D...		Potri.016G131400 [exp]	6.32	0.9206
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.010G191300 [exp]	6.92	0.9037
AT3G12630		SAP5	stress associated protein 5, A...		Potri.009G063900 [exp]	9.21	0.8839
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	9.38	0.8911	ATL2.3
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Potri.009G057900 [exp]	10.00	0.8811
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.008G066000 [exp]	10.58	0.8740
AT5G02220			unknown protein		Potri.010G201900 [exp]	11.40	0.8758
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.005G036800 [exp]	13.74	0.8981

Compare expression of checked genes

Potri.001G295500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.