Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14820 771 / 0 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 578 / 0 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 562 / 0 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 525 / 0 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT4G31820 487 / 1e-166 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT1G67900 440 / 3e-147 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 384 / 6e-126 Phototropic-responsive NPH3 family protein (.1) AT5G47800 380 / 5e-125 Phototropic-responsive NPH3 family protein (.1) AT5G03250 362 / 2e-117 Phototropic-responsive NPH3 family protein (.1) AT5G13600 355 / 7e-115 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089500 [exp] 1058 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 751 / 0 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 576 / 0 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 546 / 0 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 459 / 8e-155 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 455 / 4e-153 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G112600 [exp] 398 / 2e-130 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G003700 [exp] 394 / 8e-130 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 395 / 2e-129 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033796 [exp] 892 / 0 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 880 / 0 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 560 / 0 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 556 / 0 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 545 / 0 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 501 / 2e-166 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 463 / 6e-156 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 402 / 6e-133 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 369 / 1e-119 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 365 / 1e-118 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.001G295600.3 pacid=42788908 polypeptide=Potri.001G295600.3.p locus=Potri.001G295600 ID=Potri.001G295600.3.v4.1 annot-version=v4.1 ATGAAGTTCATGAAACTTGGATCAAAGTCAGATTCGTTTCAAACAGATGGGAATAGTATTAGGTATGTGGCTACCGAGTTGGCAACTGATATCACTGTTA ACGTTGGGGATATAAAGTTTCATCTGCATAAGTTTCCTCTTCTGTCCAAAAGCGCTCAGTTGCAGAAGTTGGTCACAACTGCCAATGGAGAAAACAGTGA TGAAGTTGACATTTCTGATATTCCGGGTGGGCCTTCTGCCTTCGAGATATGTGCAAAATTTTGTTATGGCATGACTGTAACCATCAATGCTTATAATGTT GTTGCTGCCCGATGTGCGGCTGAGTACCTGGGAATGCATGAGACTATCGAAAAAGGGAACCTCATTTACAAAATTGAAGTCTTCCTTAGTTCTAGCATTT TCCGCAGCTGGAAGGATTCAATCATTGTTCTTCAGACCACAAGGTCACTTTTGCCATTATCCGAGGAACTGAAGGTGATCAGCCATTGCATTGATGCCAT AGCTGCAAAGGCCTGTGTTGATGTTTCAAAAGTTGAGTGGTCCTATTCATACAATCGAAAAAATCTCCCTGAGGAAAATGGGACTGAATCAAACTTGAAT GGTCTGAGAAACCGGTTAGTGCCAAAGGACTGGTGGGTTGAGGATTTGTGTGAGCTTGAAATCGGATTATATAAGCGTGTTGTTATTACGATTAGGACCA AAGCCATACTTTCTGATGAGGTGATTGGAGAAGCTTTGAAAGCTTATGCTTACAGAAGGTTGCCAGGTTTCAGCAAGGGTATGATCCAGAGTGGACAAGC AGCAAAATATCGATCAACAGTTGATACCATTGTGTGGCTGTTGCCTGCTGAGCGAGGCAGCGTCTCCTGTAGTTTCTTGCTGAAGCTATTAAAAGCAGCC ATGTATGCTGACTTTGGTGATACAACAAAAGGACAGCTGATAAAGAAAATAGGTCATCAACTAGAGGAGGCTTCTGTAAATGATCTTTTGATTCGTGCAG GGGAAGGAGAGACTATGATATATGATGTTGATTCAGTAAAGAAAATGGTCGAAGAGTTTCTGATGCGAGATCAGATTGATGAGATTGAGTCAGAAGAAGG CCATGAGGTTCAGGAGATGAGAAAACCTGGGATTTTATCTGATGCTTCCAAGCTCATGGTGGCAAAACTGATAGATGGATATCTAGCTGAGATAGCAAAG GATCCAAATCTGCCCCTGTTGAAGTTTATTGAACTTGCTGAGATGGTATCTGGTATCTCTAGACCTGCTCATGATGCACTTTACAGGGCAGTTGACATGT ATCTCAAGGAACACCCAGGGATCAGCAAGAGTGAGAGGAAGAGGATATGCAATTTGATGGACTGCAAGAAGCTATCAGTTGATGCATGCATGCATGCGAT GCAGAATGACAGACTACCATTGCGTGTAGTCGTGCAGGTACTCTTCTTCGAGCAGGTCAGGGTGGCTGCGTCATCAGGCAGTAGCACTCCCGACCTTCCT AAAAGCATCAGGGATCTTAACAATGGGTCTCAAAGGAGCTCAAGGTCAACCACTACTAACACTGAAGAAGATTGGGATGCTGTGGCCACTGCTGATGAGC TCAAGGCTCTAAAGGAGGAGGTAGCTTCCTTGAGATTGGCTAATGGTAGAAATGGTGTAGATAAGGCTGCCAGTAACAAATTGAAAGGGATGCTTAAGTC GAAGAAGATCTTTACTAAGCTCTGGTCAAGCAAAGGAGAAAAGGGTGAGAAGAGTGGCTCGGATTCATCAGAGAGTACTGGTTCTGCTAACATGGAAGAA GCTAAATCTACACCTTCCAGAAATAGGAGGCATTCAGTCTCTTAG
AA sequence Show only first row Show all	>Potri.001G295600.3 pacid=42788908 polypeptide=Potri.001G295600.3.p locus=Potri.001G295600 ID=Potri.001G295600.3.v4.1 annot-version=v4.1 MKFMKLGSKSDSFQTDGNSIRYVATELATDITVNVGDIKFHLHKFPLLSKSAQLQKLVTTANGENSDEVDISDIPGGPSAFEICAKFCYGMTVTINAYNV VAARCAAEYLGMHETIEKGNLIYKIEVFLSSSIFRSWKDSIIVLQTTRSLLPLSEELKVISHCIDAIAAKACVDVSKVEWSYSYNRKNLPEENGTESNLN GLRNRLVPKDWWVEDLCELEIGLYKRVVITIRTKAILSDEVIGEALKAYAYRRLPGFSKGMIQSGQAAKYRSTVDTIVWLLPAERGSVSCSFLLKLLKAA MYADFGDTTKGQLIKKIGHQLEEASVNDLLIRAGEGETMIYDVDSVKKMVEEFLMRDQIDEIESEEGHEVQEMRKPGILSDASKLMVAKLIDGYLAEIAK DPNLPLLKFIELAEMVSGISRPAHDALYRAVDMYLKEHPGISKSERKRICNLMDCKKLSVDACMHAMQNDRLPLRVVVQVLFFEQVRVAASSGSSTPDLP KSIRDLNNGSQRSSRSTTTNTEEDWDAVATADELKALKEEVASLRLANGRNGVDKAASNKLKGMLKSKKIFTKLWSSKGEKGEKSGSDSSESTGSANMEE AKSTPSRNRRHSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.001G295600 [exp]	0	1
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	7.14	0.8114
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.011G110700 [exp]	11.66	0.7959	PEPC.2
AT1G75717			unknown protein		Potri.005G238400 [exp]	13.96	0.7433
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	27.27	0.7930	PGP1.2
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.005G187500 [exp]	30.04	0.7703	PIN4,Pt-PIN6.2
AT5G02420			unknown protein		Potri.001G239000 [exp]	34.46	0.7607
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Potri.001G116900 [exp]	35.07	0.7726	Pt-KEU.2
AT5G09800			ARM repeat superfamily protein...		Potri.005G057500 [exp]	40.89	0.7077
AT1G61670			Lung seven transmembrane recep...		Potri.016G137700 [exp]	41.49	0.7486
AT3G59680			unknown protein		Potri.019G112300 [exp]	47.95	0.7617

Compare expression of checked genes

Potri.001G295600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.